RNA id: AMCG00021469


Basic Information

Item Value
RNA id AMCG00021469
length 2685
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00021469
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18595142 ~ 18608153 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCAGGAGACTCAGTTTAACATGCGCTGGACACAGCTGCTACAGCCAGGTGCCAGTCTGCTCTCCCGAGCTGAATTGCTGCCGGAGAGTGGAGACGAGAGCCCCAACCAAGGCAATGGCAAGCTGGCCTGCTGTGGCATTCTCCTGCTGACCCAGACAGGGTACAGCAGATCTGCCCCTGAAGTGAGTCTGAGTGTTCGGGAGCAGCGTGGTGCCGGTGTGTGGATCGGTAGCATTGGGCAGAAGCCACCCTCGGGGCCGGTAACATCCTACCAGCTCCTCACTACGGATGAACGCGTCAGGCTGGATGGTCAGACGGGGGACTTGTTCACCACGGGGCATGCCATAGACCGGGAAGCCCAGTGTCCTGCAGAGCTCCAGGCAGGGCCATGCCTGCTGCAGCTCAGTGCCCTGGTGAACCCAGATGCAGAGGTTATAAATGTACGGCTGGTCATCGAAGACATAAACGACAACACTCCCAGCTTCCAGGTTAGCAACATCACCCTGCATCTGCTGGAGGATGTTCCTGTGGGAACCAGGTTGGAACTGGACCTGCATGTTTCTGACCTGGACACGGGCAGTAATGGGGCAGTGAAGTACCGGCTGGAGGGTGGCGCAGGGTTCTTCAGTGTGGAGCCCATGGGCCCGGCaccggtggtggtggtgggacGACAACTTGACCGTGAGACACAGGAGACCCACCACATGATGCTCAGCGCCGTCGACCAGGGAGACCCCCCTCTGACTGGGACTGTCGCCCTGTTGGTGCAGGTGATGGATGTCAACGACAACTGTCCTGCCTTCCCCCGTGCCAGCACCCATACCATCTCTGTGCCTGCAGACACACCCATTGGCACAGTGTTGACCCGCATCCACGCCACTGATGCTGACCTGGGCCCCAACACAGAGGTGACCTACTCCTTCAGCCCCCAAGTCTCACAGGGTGACCAGGCCCTGTTCCACCTGGACAGCCGCTCTGGAGAAATCACACTGTCAGCCAGCTTCTGCAGCGACAGCCCCACCAAGCACCTGCTGAAGATATGGGCGAGCGATCTGCTGTCACCCTGCCCACCCGCTGTCACCAACgtcactgtgtctgtactgcCTGTGCCAGGCCAGGAGCAGGTGATGGACCTCAAGTACATTGCCAAGGTCCATGACCAGACCTTGATGCTGAGGGAGGATGAGCCAGTTGGCACCACACTGGCCATTCTGGAGGTCAGGAACCCAGGGGCCATTAGGGCCCAGCCTTCCATTCAGGGAGACATGCCTTTTGTTCTCAAGCTGCATCAGGGGAAGTACGTGCTGGTGACCTCGGACTCCCTGGACTTTGAGCGCCAAAGGCAATACGATGTCCTCATTGTTGCCAGTGATGCAAAGGATGCCAGCATTCAGCACAAGAAGCTGATTCATATCCAGGTCGAGGACATGAATGATAATGCTCCCCAGTTCCACCAAAGTCTCTTCCATGTGGATATTGAGGAGAACAACCAGCCGGGAGTGTTTCTGATGTGGCTGAGTGCAACAGATGCAGACAGCCAGCAGAATGGACAGGTGCTGTACAGTCTGGGGTCAGACACACCACCCACATTCTCCATCGACAGTGGGACGGGCCTACTGTCAGTGGTGTCCGTCTTGGACCGAGAAACCAAGGAATATTACAACCTCACAGTGCTGGCCAGGGATCTGGGTGAGCCTGCACTGGAAAGCAGTGCTACAGTGGCAGTGCGTGTCCTGGACCAGAACGACAATAGCCCAGCCTTCCTCACCAGTGAGTTCATCTTCTTCATCCCTGAGAATTTTCCGCAGTTCGGTAATGTGGGCGTGATCAATGTGTCAGATGCGGACTCAGGTGACAACGGCCTCGTAAAGGTGAGACTACTAAATGTCAGCAGTCCCTTCACCATGGACAACACTCTGGGTATCCTGAAATGTACTGCCCCCGTGGACCGAGAGACCCAAGACCGGCACGAGCTGTGGATCGAGGCAAGAGATCAGGGCCGCCCCGTACGCTCTATCAATGCCAGGGTCACCGTGTTCATCCTGGATGTCAATGACAATGCCCCCAAAGTGCTGCTGCCCATCACCAACCACTCTTGCCTGACGGTGCTGCCAAGCACCGTACCTGGCACCACTGTGGCCAGGGTCTTGGCCGTGGATGAGGATGCTGGCCTCAACTCCATCATCCACTACCAGGTGAAGCCCTGTGGGACTGTCAACACCAGCCCCTTCGTGATTGACTCAGCTTCAGGAAACATCACCCTGGCCCACCAGCTGCTGGCAGAACACCACAAGCTGCACCAACTGTACGTGACCGTCAGCGACAGCGGGAGTCCCCGGCCACTGCAAGCCACAGTGTGGGTCCACCTGTGGATCAATGCAACAGCTGGGCCCTGCAGAGTAAGCACCCTGCCACCCTGCATGCCAGATCCCTACCCTGTCCCACAGGGTACCTGTGCAGGGAGGGATCCCCAGGAATCCAAGAATTCCCAAATGGTCTTTATCCTTGGCCTCTCCATGATGCTGACTTCCATGGTCTTCCTGACAGCGGGAATCTGCACATTCCTACTGCTGGGATGTAGGGACAGGAAgactaaaattaaaactaattgtAAAGAGACAGAAATACCATTAAAACTGATTGAGGCATATGACATGAAAGACTGGCCAGATGTACAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107606 lncRNA downstream 45385 18549444 ~ 18549757 (-) True G86203
TU107551 lncRNA downstream 271117 18323491 ~ 18324025 (-) True G86154
TU107375 lncRNA downstream 961156 17633755 ~ 17633986 (-) True G86029
TU107370 lncRNA downstream 1009701 17581242 ~ 17585441 (-) True AMCG00021444
TU107637 lncRNA upstream 14410 18622563 ~ 18623590 (-) True G86225
TU107652 lncRNA upstream 51145 18659298 ~ 18663129 (-) True G86240
TU107657 lncRNA upstream 142519 18750672 ~ 18811147 (-) True G86244
TU107662 lncRNA upstream 310101 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 397463 19005616 ~ 19006432 (-) True G86253
AMCG00021468 mRNA downstream 19708 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021464 mRNA downstream 117198 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 315357 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021460 mRNA downstream 346300 18241237 ~ 18248842 (-) False AMCG00021460
AMCG00021461 mRNA downstream 354563 18232571 ~ 18240579 (-) True AMCG00021461
AMCG00021467 mRNA upstream 55070 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021471 mRNA upstream 154775 18762928 ~ 18772587 (-) True AMCG00021471
AMCG00021470 mRNA upstream 189765 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021474 mRNA upstream 384571 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 450731 19058884 ~ 19073801 (-) True AMCG00021476
TU107532 other downstream 346248 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 668434 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1042376 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1042878 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1171724 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 213380 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 652792 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 667201 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 857907 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1721269 20329422 ~ 20335304 (-) True G86600

Expression Profile