RNA id: AMCG00021471


Basic Information

Item Value
RNA id AMCG00021471
length 450
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00021471
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 18762928 ~ 18772587 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAACATAAAGAAGGGGAAAACACTCAAAGAGAATCAGCACTCCAGCTGCTGCACTGCCCAGCCCTGTGTGGCACTGCCCCTGGACACGGACAGCATTCTAGACACCACAGTAGCAGCAGTGTCTCTGTTCCTGCCCACTCGGGAGCAGCAGCCCCTCCCACATCCAAGCTGCCCCATGCTGGCCCCACACTACCCATGCATTACCCCCACATCTCCAATTAGCAGGTATCTGGGGTTCCTCAGCACGGGTGACCAAGCAGCCAAGGGGAATTACGGGCTGCTGGACCAGATCCAGGCACTGCGGTGGATCAGCGAGAATATCGGCTACTTCGGGGGAGACTCCAACAGGATCACTGTGTTCGGCTCGGGCATTGGTGCATCCTGCGTCAGCCTGCTCACGCTTTCCCACCATTCTGAAGGCACCCTCTTCTCACACATTGATTAG

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107652 lncRNA downstream 99799 18659298 ~ 18663129 (-) True G86240
TU107634 lncRNA downstream 131461 18592640 ~ 18631467 (-) True G86222
TU107637 lncRNA downstream 139338 18622563 ~ 18623590 (-) True G86225
TU107606 lncRNA downstream 213171 18549444 ~ 18549757 (-) True G86203
TU107551 lncRNA downstream 438903 18323491 ~ 18324025 (-) True G86154
TU107662 lncRNA upstream 145667 18918254 ~ 18918531 (-) True G86249
TU107666 lncRNA upstream 233029 19005616 ~ 19006432 (-) True G86253
TU107706 lncRNA upstream 380418 19153005 ~ 19153285 (-) True G86285
TU107752 lncRNA upstream 485970 19258557 ~ 19258855 (-) True G86324
TU107823 lncRNA upstream 673830 19446417 ~ 19448494 (-) True G86386
AMCG00021467 mRNA downstream 78507 18663223 ~ 18684421 (-) True AMCG00021467
AMCG00021469 mRNA downstream 154775 18595142 ~ 18608153 (-) True AMCG00021469
AMCG00021468 mRNA downstream 187494 18566104 ~ 18575434 (-) True AMCG00021468
AMCG00021464 mRNA downstream 284984 18477072 ~ 18477944 (-) True AMCG00021464
AMCG00021462 mRNA downstream 483143 18249018 ~ 18279785 (-) True AMCG00021462
AMCG00021470 mRNA upstream 25331 18797918 ~ 18809251 (-) True AMCG00021470
AMCG00021474 mRNA upstream 220137 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021476 mRNA upstream 286297 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021477 mRNA upstream 303394 19075981 ~ 19100225 (-) True AMCG00021477
AMCG00021482 mRNA upstream 451844 19224431 ~ 19231673 (-) True AMCG00021482
TU107532 other downstream 514034 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 836220 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1210162 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1210664 17547162 ~ 17552264 (-) False G86010
TU107289 other downstream 1339510 17419604 ~ 17423418 (-) True G85953
TU107653 other upstream 48946 18821533 ~ 18909908 (-) True G86241
TU107753 other upstream 488358 19260945 ~ 19267461 (-) False AMCG00021483
TU107755 other upstream 502767 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 693473 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1556835 20329422 ~ 20335304 (-) True G86600

Expression Profile