RNA id: AMCG00021473


Basic Information

Item Value
RNA id AMCG00021473
length 1784
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00021473
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19031291 ~ 19045850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTCCCCCCTCTGCTCCGCCTCCAAACGCGGCGGCGCCGGAGCCGGAACGCCGGTGACTCATTGGTCGACTTCCAAGGATTGCAGGAAACCCACCGGAGCCGCCGCTGTTGTTGTTGCCGCTGCAGACATGGCCTCGGACGGTGTGGATGAGAGATCCCCTCTGCTGTCAGCGCCCACCTCCGGGAATGTCACCCCCACAGCCCCGCCGTACCTGCAGGAAACCAGCCCGAGAGccgAGTTGCCTCCTCCTTACACAGCTATAGCCAGTCCGGACACAGGCGGCGTGCCAGTGATAAACTGCAGGGTCTGCCAGTCCCTCATCAATCTGGACGGCAAGCTTCATCAGCATGTGGTTAAATGCACTGTGTGCAACGAGGCCACGCCAATCAAAAACCCACCAACTGGAAAGAAGTATGTGAGATGTCCGTGCAACTGCCTACTCATCTGTAAAGACACATCTCGTAGGATAGGATGTCCACGCCCCAACTGCAGGCGGATTATCAACCTTAGCCCCGTGATGGTGATCCCCGAGGAGCAGCCGGCCCAGCCAGCTCTGCCCGTGCAACCCGAGGGCATGCGTGTGGTGTGTGGGCACTGCGGGAACACGTTCCTGTGGATGGAACTCAGATTCAACACATTGGCAAAATGCCCACACTGCAAAAAAATATCTTCAGTTGGTAGCGCTCTGCCCAGGAGACGCTGCTGCGCCTACATCACCATTGGCATGATCTGCATCTTCATTGGCGTCGGATTAACTGTTGGTACCCAGGACTTTGCTAGAAGCTATCATGCCACGTATGTGTCCTGGGCTTTCGCTTACCTCCTGGGTTTAATCTGTTTGGTCCGCGCCTGTTACTGGGGAGCCATTAAAGTAAGCTATCCAGAAAACAGCTTTGCATAGACTTGCCTCATCGAGTGAACCTTTCCTttgatgtttctttgtttcttgtgGATTCAGACGGTTTGGCAGTGTTGGATGCTAGACGGTGGACATTTTACACGTTTTAAGTATTGAGTTTTGTTACCAACTAGACCAAAAGAGGTTATCTTTTAAGAACAATTGCCCATTGCACTACATtttatgcaattattattttatgttgctGCTAGATTGCCCAGCTCTAATGACAACAGCTGAGTTTTCATGTATGAAACTGcctgtatgtgttttttgttttttttagaatgaactgtatgacattttattctgttaaaTCCATTTGTGCCATTATTGAAAAACTATATAAAGGAACAGGTGTTAACCTTTCAAAACACTTCATGTTTGTACTGGTATCTTAAAATTAACTTAATGCTATACTGCTTGCATTCAGTTTAAgcaataaactttatttttttgtcatttgtgaaATTGCTCGGCACATTCACGTACTGAACTCTTTAACAATCTCATTGCCTTCTAACAGCTATGTaaatggtttagttttttttagttttttttaccaGAAGTGTTGGAGATCACTCATGTGCATGATTTTCTGCACCCTTGTTTGATCTGCCTATTTCAGAAGTGTTAAAGTATCGATCCTCACATTGTGCTCCCTGTAATGTATTGTACAAACTCTCCCTGCTTACAGCTTGTTTCTCGGATCTGTGCAGAACAAAGAGTAGCTTTACAATAGTTCATCATTATGTTGAGAAAATGGGCACAATAAGTATCTTGTTCTgaatgtgaagaaaataaatctatttgtacattaataattaaatacactaaAAGCAGTAGATGAAGTTGGAATATGCcttgtgtctttttaaaaagga

Function

GO: NA

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107641 lncRNA upstream 351415 18679113 ~ 18679876 (+) True G86229
TU107639 lncRNA upstream 366758 18663193 ~ 18664533 (+) True G86227
TU107625 lncRNA upstream 412735 18615170 ~ 18618556 (+) True G86217
TU107605 lncRNA upstream 481532 18549428 ~ 18549759 (+) True G86202
TU107503 lncRNA upstream 801625 18229465 ~ 18229666 (+) True G86118
TU107691 lncRNA downstream 1199 19047049 ~ 19055103 (+) False AMCG00021472
TU107705 lncRNA downstream 107165 19153015 ~ 19153282 (+) True G86284
TU107735 lncRNA downstream 178603 19224453 ~ 19226768 (+) True G86309
TU107751 lncRNA downstream 212608 19258458 ~ 19258855 (+) True G86323
TU107802 lncRNA downstream 346247 19392097 ~ 19394874 (+) True G86367
AMCG00021466 mRNA upstream 474891 18555792 ~ 18556400 (+) True AMCG00021466
AMCG00021465 mRNA upstream 491143 18488903 ~ 18540148 (+) True AMCG00021465
AMCG00021463 mRNA upstream 643768 18338056 ~ 18387523 (+) True AMCG00021463
AMCG00021455 mRNA upstream 843129 18177180 ~ 18188162 (+) True AMCG00021455
AMCG00021454 mRNA upstream 860747 18167847 ~ 18170544 (+) True AMCG00021454
AMCG00021472 mRNA downstream 1321 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021475 mRNA downstream 61927 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021480 mRNA downstream 118828 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021478 mRNA downstream 157028 19202878 ~ 19220274 (+) True AMCG00021478
AMCG00021479 mRNA downstream 186278 19232128 ~ 19247678 (+) True AMCG00021479
TU107506 other upstream 781605 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2027160 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2317253 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2369409 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 2438318 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 233915 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 453950 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1296760 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1332573 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1353076 20398926 ~ 20401249 (+) True G86601

Expression Profile