RNA id: AMCG00021478


Basic Information

Item Value
RNA id AMCG00021478
length 1702
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00021478
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19202878 ~ 19220274 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATCAAAGCACCCCAGTCCGAGAGCACCAGCCCGCCCAGCAGCTTCTCCACACACCGGCGACATGGCCAACGCTTACCTACAAGGAGTGGAGATCTCTGCCACACAGTTTCTGGATATTTTTCGCCATTATGACAACGATGGCAATGGCTATATTGAAGGCAAGGAGCTGCAGAGCTTTATTAAAGAGCTCCAGCAAGCTCGAAAACAAGCAGGACTAgagttaacagatcaaatgaAGGCTTTTGTGGACAAGTATGGACAGAACGCCGATGGAAAGATAGGCATTGTGGAGCTCGTTCAGATATTGCCCACAGAAGAAAACTTCTTGTTATTTTTTCGGCAGCAGCTGAAGTCCTGTGCAGAGTTcatggaggCCTGGAGGAAGTATGATGCCGATCACAGCGGGTACATTGAGGCGGACGAACTGAAGCTGAAAATATTTGATTCCAACAATGACGGGAAGCTTTGCCTGGCAGAGATGGCAGGACTATTACCGGACCAGGAGAACTTTTTACTCAAGTTTCAGGGAGTCAAAATGCCAAGAAAAGAGTTCAACAAGATTTTTGAATTATACGATCAGGACGGTAATGGATACATGGACGAGAATGAGCTGGATGCCTTATTAAAAGACCTGTGTGAAAAAAACCAAAAGgTGTTAGACATCAACAATATCGCCACTTACAAGAAAGCTATCATGGCCTTGTCTGATGGGGGGAAGCTGTACAGAACCGAGCTGGCACTCGTCCTGTGTGCAGACGAGATCTGAGGCCCCGCCCAGTCAGCCCTCGCCCGCTAGTCATCTGTGTAAAGATAGCGACAGACTCCAGCCGTGTTCTACCagtccagtcctggggggccaccGTCGAGTCAGTTCTATAGGTCTCCTTAAACCAGCATCTGCAGGAGACCCAGTGAAGGGCCCAGTGGTCTCCGTTCAGAGAATCATCTGAGGAGTGAAAACCAGCAAGCGGCCCTCCGGGACTCGAGCTTTAGAACATTGCTGTAAGATgtgtttcccttttttctttttaatctgtaaatttTACTGACAGCGTATAGATACATCACTGGGACATGTGGCACATACTTTTCAACCTGTTGTTTCTATACTGTTTGTAATGTACAGCTTTTGTAATTATGAGATTATTACAACAATAAAGCACATATGCCTTGACTCTATGTTATATATTCTGTGATACACTATGATTATGAAGAGATGTGCACAGAGCTATATGTACTGCTAAAAAAATGACTATTTATAAACTGCGATATATTGACACCAGTAACAAATTCTGCCTGATAATATTTTAGCCAAAGCAATAAATTGTTACCAGAAGACATTGAGGTGAAGTGTATACTAACTGGGGGAATTACAGATTATGTACACCGACACTGTTCAGCTACATTTACGTTTGCAGTGCATGTTTATTGCTGAAGGCTACCCTTTCACTAAGGCATTAATTAAGAATGTAATCCACATTCCTCAATACTTTATTAGTACTGACATACCAGCCATGACTCACTCAGTCTTTAGAGGTATATCACACGATTTGCACTGGAGGAATGATGTGCTACACTGTGCTTTACACCAGACTCACTGTGCAACCTGTTATTAAAGTCTGAACACTACCTAACAAAGTCTCACTGTGTtgtggtgtaaaaaaaaatctgaaattaaactgaataaagtgtgcctgtgtg

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107705 lncRNA upstream 49596 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 147775 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 523002 18679113 ~ 18679876 (+) True G86229
TU107639 lncRNA upstream 538345 18663193 ~ 18664533 (+) True G86227
TU107625 lncRNA upstream 584322 18615170 ~ 18618556 (+) True G86217
TU107735 lncRNA downstream 4179 19224453 ~ 19226768 (+) True G86309
TU107751 lncRNA downstream 38184 19258458 ~ 19258855 (+) True G86323
TU107802 lncRNA downstream 171823 19392097 ~ 19394874 (+) True G86367
TU107824 lncRNA downstream 228455 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 365715 19585989 ~ 19587369 (+) True G86419
AMCG00021480 mRNA upstream 22357 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021475 mRNA upstream 83310 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021472 mRNA upstream 147779 19047171 ~ 19055099 (+) True AMCG00021472
AMCG00021473 mRNA upstream 157028 19031291 ~ 19045850 (+) True AMCG00021473
AMCG00021466 mRNA upstream 646478 18555792 ~ 18556400 (+) True AMCG00021466
AMCG00021479 mRNA downstream 11854 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021485 mRNA downstream 60777 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021484 mRNA downstream 79262 19299536 ~ 19307124 (+) True AMCG00021484
AMCG00021488 mRNA downstream 121546 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021491 mRNA downstream 163755 19384029 ~ 19391754 (+) True AMCG00021491
TU107506 other upstream 953192 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2198747 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2488840 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2540996 16656644 ~ 16661882 (+) True G85787
TU107049 other upstream 2609905 16590181 ~ 16592973 (+) True G85764
TU107757 other downstream 59491 19279765 ~ 19282915 (+) False AMCG00021485
TU107857 other downstream 279526 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1122336 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1158149 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1178652 20398926 ~ 20401249 (+) True G86601

Expression Profile