RNA id: AMCG00021483


Basic Information

Item Value
RNA id AMCG00021483
length 1416
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00021483
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19259434 ~ 19274440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCTGCTGCGGAGCGTGGCGGTCCTCGGGGACGAGCTGCTCACAGAGGACCTCAGCGACCAGGGCGCCATCGGCCAGCTGCTGGGTGAGGCCACGGGCACAGGCTCTGTCTGGACTCGCACCTGCAGCCGGGGCAGGGCAGGGGCAGCGCTAATTAAAGTGTACAGTTTAAGTCGTGCAAACCCTGACGTCACCCTGTGCAAAGTGACTGATATTGAGTGTGAGAAGCGGTGGGTCGGCACCATGTCCGGTCCAGAAGTGGCGACTAAACACAGCGAGGGGCCCGTCTTCAGACACACCGTCACCGACAGCGATCTGGGCATGCGTGAGagcTCTTTGAAGGAGAGGCATCTTTCTGTGCTGAAGAAAGTGGTGAAAAGAAACCAGAATGAGAAGGCCAGGGAGCATCCTGAATACACTCTGGTCATCTGTGACCTGCTCAAAATATGCAGTTTGCCATTTCTCAAAGAGAAGTCTTCAGACGAGAGCAGCTACGCCCAGATCGTGAAGGAGTGTCTCTCTCAGATGGGTTACCTGATGCGAGTTCCCAGTGCCGACGTCCGACTGCAGGTCTGTGACTCCATCGCAGCCTTTTATCATCCGAAGGCCCCCAGACAGCAGGTTGAAGGTCTCCATCCCACCTCTCCGAGCTACAAGCCCCAGATGGCGGAGGAGAGCGGCGTGGCCGAAACCCTGGTGCTGTCCCTGGCCCTGCTGGAGGAGCAGCCTGCGGTGCGGCTGCAGGTCCTCCGCGCTCTGCAGCTGCTGTCCAGCGCCTCAGCTCGGGAACACATGGCCATCCTGCACGGCAGCGGAGATGTTCCAGTCGAACGCAGTTCAGACAGCCGGGCTGATCCTCTCGTCTGTGAAGAGATGGACGAGCCAGTTGTGCACCTGAGCGCCACACAGGACTTCAGCTTCCCTCTCCTGCTGACCTGTGCTGTGCTCTTCTCCCTAGGACTCAACTGCAGCCTGATCCTGCGAGTGCGCGGAGCCAGCAAGATCTGCGCCCTGATGAACGAGCCGGACCCAAGCGGCCGGCTGCTGCGCCGCTGCACGGACGTCCTGGGGAACCTGCTGGAGCTCGGCAGCAAGGAGGAGGCCACGTCTCAGCTCAGCACCACCGACTGCTTCATACCCGCAGCTGCCctgcctgccctgccctgcctgacctgccctgccctgcctgtCCAGCCTGTCCAGCCTGTCCAGCCTGCCCTGCCCcatgccctgccctgccctgcagACCCGCagctgccctgccctgccctgcctgtCCAGCCTGCCCTGCCCCATGCCCTGCCCTGCAGACCCGCagctgccctgccctgcccacCACACCCGCACACACCTCTGGATGCCCGGCCAGGGAGTGCGTGCGgcggcagacacacacaagctaTCACATTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107752 lncRNA downstream 579 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 106149 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 253002 19005616 ~ 19006432 (-) True G86253
TU107662 lncRNA downstream 340903 18918254 ~ 18918531 (-) True G86249
TU107657 lncRNA downstream 448287 18750672 ~ 18811147 (-) True G86244
TU107823 lncRNA upstream 171977 19446417 ~ 19448494 (-) True G86386
TU107825 lncRNA upstream 174289 19448729 ~ 19449107 (-) False AMCG00021495
TU107933 lncRNA upstream 626018 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 629556 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 638097 19912537 ~ 19918803 (-) True G86477
AMCG00021481 mRNA downstream 7172 19248894 ~ 19252262 (-) True AMCG00021481
AMCG00021482 mRNA downstream 27761 19224431 ~ 19231673 (-) True AMCG00021482
AMCG00021477 mRNA downstream 159209 19075981 ~ 19100225 (-) True AMCG00021477
AMCG00021476 mRNA downstream 185633 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021474 mRNA downstream 233351 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021489 mRNA upstream 22043 19296483 ~ 19296899 (-) True AMCG00021489
AMCG00021487 mRNA upstream 32917 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021490 mRNA upstream 70526 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021486 mRNA upstream 101971 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021494 mRNA upstream 118571 19393011 ~ 19409496 (-) True AMCG00021494
TU107653 other downstream 349526 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1010540 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 1332726 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1706668 17547162 ~ 17552766 (-) True G86010
TU107755 other upstream 914 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 191620 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1054982 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 1083861 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 1121172 20395612 ~ 20397783 (-) True G86649

Expression Profile