RNA id: TU107753


Basic Information

Item Value
RNA id TU107753
length 1017
RNA type TUCP
GC content 0.56
exon number 8
gene id AMCG00021483
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19259434 ~ 19274440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTGTAGTAGCAACGCCAGGGATGTCTGCCGGTGAGGCGCCGCTGCTGCCggtttatttcatgttgtttttcatgaatAGGGGCAGCGCTAATTAAAGTGTACAGTTTAAGTCGTGCAAACCCTGACGTCACCCTGTGCAAAGTGACTGATATTGAGTGTGAGAAGCGGTGGGTCGGCACCATGTCCGGTCCAGAAGTGGCGACTAAACACAGCGAGGGGCCCGTCTTCAGACACACCGTCACCGACAGCGATCTGGGCATGCGTGAGCATGCTGCTCTGAAGCCGATTGATCTCAGTCGCATCATTAATCTTCTAGAAGACCCACTTGCAagcTCTTTGAAGGAGAGGCATCTTTCTGTGCTGAAGAAAGTGGTGAAAAGAAACCAGAATGGTTTTcTCCTTAAAGACCTGGTCCAAATATTTAAGATTCTGAATCTGTGTGCAGAGAAGGCCAGGGAGCATCCTGAATACACTCTGGTCATCTGTGACCTGCTCAAAATATGCAGTTTGCCATTTCTCAAAGAGAAGTCTTCAGACGAGAGCAGCTACGCCCAGATCGTGAAGGAGTGTCTCTCTCAGATGGGTTACCTGATGCGAGTTCCCAGTGCCGACGTCCGACTGCAGGTCTGTGACTCCATCGCAGCCTTTTATCATCCGAAGGCCCCCAGACAGCAGGTTGAAGGTCTCCATCCCACCTCTCCGAGCTACAAGCCCCAGATGGCGGAGGAGAGCGGCGTGGCCGAAACCCTGGTGCTGTCCCTGGCCCTGCTGGAGGAGCAGCCTGCGGTGCGGCTGCAGGTCCTCCGCGCTCTGCAGCTGCTGTCCAGCGCCTCAGGACTCAACTGCAGCCTGATCCTGCGAGTGCGCGGAGCCAGCAAGATCTGCGCCCTGATGAACGAGCCGGACCCAAGCGGCCGGCTGCTGCGCCGCTGCACGGACGTCCTGGGGAACCTGCTGGAGCTCGGCAGCAAGGAGGAGGCCACGTCTCAGCTCAGCACCACCGACTGCTTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107752 lncRNA downstream 2090 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 107660 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 254513 19005616 ~ 19006432 (-) True G86253
TU107662 lncRNA downstream 342414 18918254 ~ 18918531 (-) True G86249
TU107657 lncRNA downstream 449798 18750672 ~ 18811147 (-) True G86244
TU107823 lncRNA upstream 178956 19446417 ~ 19448494 (-) True G86386
TU107825 lncRNA upstream 181268 19448729 ~ 19449107 (-) False AMCG00021495
TU107933 lncRNA upstream 632997 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 636535 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 645076 19912537 ~ 19918803 (-) True G86477
AMCG00021481 mRNA downstream 8683 19248894 ~ 19252262 (-) True AMCG00021481
AMCG00021482 mRNA downstream 29272 19224431 ~ 19231673 (-) True AMCG00021482
AMCG00021477 mRNA downstream 160720 19075981 ~ 19100225 (-) True AMCG00021477
AMCG00021476 mRNA downstream 187144 19058884 ~ 19073801 (-) True AMCG00021476
AMCG00021474 mRNA downstream 234862 18992724 ~ 19026083 (-) True AMCG00021474
AMCG00021489 mRNA upstream 29022 19296483 ~ 19296899 (-) True AMCG00021489
AMCG00021487 mRNA upstream 39896 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021490 mRNA upstream 77505 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021486 mRNA upstream 108950 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021494 mRNA upstream 125550 19393011 ~ 19409496 (-) True AMCG00021494
TU107653 other downstream 351037 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1012051 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 1334237 17926099 ~ 17926708 (-) True G86049
TU107350 other downstream 1708179 17547162 ~ 17552766 (-) True G86010
TU107351 other downstream 1708681 17547162 ~ 17552264 (-) False G86010
TU107755 other upstream 7893 19275354 ~ 19278023 (-) True G86327
TU107835 other upstream 198599 19466060 ~ 19468733 (-) False AMCG00021495
TU108097 other upstream 1061961 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 1090840 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 1128151 20395612 ~ 20397783 (-) True G86649

Expression Profile