RNA id: AMCG00021484


Basic Information

Item Value
RNA id AMCG00021484
length 1696
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00021484
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19299536 ~ 19307124 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTACTTCCTGTTTGTGAGAGAAACGTGGTTTACCCCAGGAGCTCCAGAGGGATTCCTTACTGCGGATTTGCTCAATAACAACAGTTCGGCTGTGTCTCATTTAATAAGACATATGCGTTTAGGTGccgtttatttttgtgtgtattttattcccAGACAGCAGCATGGTGTGGTGCAGCCGAGCGGCTCTGAGGAAGTACGGCAACTTTGTAGACAACCTGCGGCTGTACGTGAGAGGGGGCAGTGGGGGCATGGGCCTGCCTCGCCTCGGGGGCCAAGGAGGGAAAGGGGGTGACGTCTGGGTGGTCGCCAAAGACGGGGTCACCCTGAAGAAAATCAAGGACAAACACCCCCACAAGCGATTCGTAGCCAGCGTGGGGATGAACAGCAGTGTGCGTGCTCTGAAGGGTGGCTCGGGAGCGGACTGCGAAATCGTGGCTCCGCCGGGCATCACGGTCATCACGGACACCGGGAAGGTCATAGgggAGCTGGACAACGAGGGGCAGCGTGTGCTGGTGGCCCGGGGGGGCCGTGGGGGCTGCCTGGCCTCTGGGTTCCTGCCCAGTAAAGGACAGACTCGGCACATCCAGCTAGACCTGAAGCTCATCGCAGACTTCGGCCTCGTGGGGTTTCCCAATGCAGGCAAGTCCTCCCTGTTGAGTGTGCTCTCCCAGGCCCGGCCCCAGATCGCCAGTTATCCATTCACCACTCTGAGGCCAGAGATCGGGAAGATCATGTATGAAGACTATAAGCAGGTGTCGGTAGCGGACCTGCCTGGCCTGATCGAAGGGGCTCACCTGAACAAGGGCATGGGCCACAAGTTCCTGAAGCACGTGGAGCGCACCAGGCAGCTGCTGTTCGTGGTTGATGTCAGTGGCTTCCAGCTGTCGCACAAGACCGAGTTCAGGACGGCCTTTGAAGCCGTGCAGCTCCTGACCAAGGAGCTGCAGTTGTATCAGGAGGAGCTGCTGACCAAGCCGGCGCTGCTGGCCGTCAACAAGATGGATTTACCGAATTCAGAGGAGCGTCTGAACGAGCTGGTCGAGCAGCTGCGGCACCAGGAAGACTTCGCCCTCTTGCTGCCCGAGGGAACGGCTCCGAGAGGCGCCCTGTGCTTCAGACACATCATCCCGGTCTCGGCCTCCACCGGACACGGCGTCGCGGAACTGAAGGCCTGCCTGAGATGGACGCTGGACGAGCAGGCCGACGCCGCGCAGGAGGAGCAGCGCAGAGAGAAGCTCCGAGACCTGCGGCCCCCAGCGGCCCCTGTGGTCCCGTGGCGCCGAGGCCAGAGCCAGACATGAGGAGGGATACCGAGAGCAGGCCAGTGTGCCGCCTGCTGAGACACCGAGAGATGTCGCTAACCCTGAGTCTCCCAGGACGGGTACTGGTCTCTCTGCGTTGGTCTCCCACGTGAGATTGGGTGGATTCTCAAGGGCCACAGCAATCAGGAGGCTCTGGACATGTCTTACCCAGCAGACTGGCATCGCTGGGGCCCTTCAAATAAACTGTTAGTGCGACTTAGTGACCCTGAGATCAGCTCAAGGGCTGCAGCCCAGTCAGCCGCGTGAAACCTGCGTTCACAGAACAAACCCGTCCTAACACTGCTgcgcattttatttaataaaggtCCTGAGTCCGCAGCTCTAGTATGGTTTGGAGTTTTTGAAACATCTTTATTGATGGCACTTGG

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107751 lncRNA upstream 40681 19258458 ~ 19258855 (+) True G86323
TU107735 lncRNA upstream 72768 19224453 ~ 19226768 (+) True G86309
TU107705 lncRNA upstream 146254 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 244433 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 619660 18679113 ~ 18679876 (+) True G86229
TU107802 lncRNA downstream 84973 19392097 ~ 19394874 (+) True G86367
TU107824 lncRNA downstream 141605 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 278865 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 522692 19829816 ~ 19837813 (+) True G86454
TU107909 lncRNA downstream 545245 19852369 ~ 19894619 (+) True G86455
AMCG00021485 mRNA upstream 4757 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021479 mRNA upstream 51858 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021478 mRNA upstream 79262 19202878 ~ 19220274 (+) True AMCG00021478
AMCG00021480 mRNA upstream 119015 19164678 ~ 19180521 (+) True AMCG00021480
AMCG00021475 mRNA upstream 179968 19107777 ~ 19119568 (+) True AMCG00021475
AMCG00021488 mRNA downstream 34696 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021491 mRNA downstream 76905 19384029 ~ 19391754 (+) True AMCG00021491
AMCG00021493 mRNA downstream 115600 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021492 mRNA downstream 153340 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021496 mRNA downstream 163117 19470241 ~ 19471029 (+) True AMCG00021496
TU107757 other upstream 16621 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1049850 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2295405 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2585498 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2637654 16656644 ~ 16661882 (+) True G85787
TU107857 other downstream 192676 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 1035486 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 1071299 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1091802 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 1360346 20667470 ~ 20667927 (+) True G86688

Expression Profile