RNA id: AMCG00021491


Basic Information

Item Value
RNA id AMCG00021491
length 2758
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00021491
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19384029 ~ 19391754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTCTAGGCACAGGTTTCGTCCGTCCATGTGGATTGAAGTGTGTTATTATTAACCTGGTGTAGGTCATCAGTACGGGCAGTACTCGACACGACATGGGGAGCTTTCTTTGCTCGTGTAACTGATCTGCTCAGGCTGATGATTTGTTATTGCCATGCGGGTGACAGCGATGAATGACCCGGACGGGCTGACGTCTTTCATTTATCAGAAAGGTCTCGGCCAAAGTTATGATCAGCAACTCCTGCAGAGCCGATATAATTAGTGTCGCTCCTGACGAGACACTGTCCAAGGAGATGAGTGTCCAGAGCCCAGAGGTCGAGCCCAACGGCATCACGCCGCTGCAGCAGATGTTGTCCTCCTGCTCGGGGGCTCTGATCACCTCCCTGTTTGTCACCCCTCTGGATGTGGTGAAGATCAGGCTACAGGCGCAGAAGAGTCCTTTTCCTAAAGGGAAATGCTTTGTGTATTGCAACGGCCTCATGGaccacctgtgtgtgtgtgagaatggcAACTCCAAAGCCTGGTATAAAGCCCCCGGGCACTTCTCGGGCACTCTGgatgcatttattaaaattatccAAAAGGAAGGTATTAGGTCTTTGTGGAGTGGGCTCCCACCGACACTGGTTATGGCCGTTCCAGCCACGGTCATCTACTTCACATGTTATGACCAGCTGCACGCGGCTCTGCGATCCAGGATGGGCGACGGTGCCAACGCCGCCCCGCTGGTGGCAGGAGCTCTGGCTCGAGTGGGCTCTGCCACCGTTATCAGCCCGCTGGAGCTGGTGAGGACCAAGCTGCAGTCGCGCCACCTGTCCTACCGGGAGCTGCGCGTGGCCGTGGGGGCCTCCATCGCTGCGGACGGCTGGCTCTCGCTGTGGAGGGGCTGGGGGCCCACGCTGCTCCGGGACGTGCCCTTCTCAGCGATGTACTGGTACAACTACGAGTGGGGGAAGGCATGGCTGTGCGAGCGCTACGGCACCAAGGAGGCCTCGGTCACCATGACGTTCGCAGCCGGAGCCGCATCTGGATCTatcGCTGCGATCGTGACGCTGCCCTTTGATGTGGTGAAGACCAGACGGCAGGTGGAGCTGGGGGAGCAGGAGGCTATGAACCTGTCTGCAAAGAGTTCCACCACCCTGCAGGTCATGCGGAGGATCGTGGCGGAGAATGGCGCAGGGGGGCTGTTCGCAGGGTTCCTGCCCCGGCTCATCAAAGTCGCCCCAGCGTGTGCAATAATGATCAGCACCTACGAGTTCGGGAAAGCCTTCTTCAGGAAACGCAACTGGGAGAGAGAGCGGGTGAACCTGCAGGACCAGGCCTGACCAGGGCAGGGGGACCCGGGGGAATGAAACTCCACTCCTGCCGACCCAGGTCTTACTGACAGAAAGAGGACGAAGAGGGGACTTGGATTAATCCAACTCGATAAGTgaacaatgtgtgtgttcagcAGCACCAGCACTCCCGGGTCTCGGTGCGTTGACGCTGTGGACAAGAGTTAAGTGGTTCGAGGTAAAACTATTTTTCTGATCCACAATTCTTCACCATCACGTGTAGAAATGCCAGATCGATACCGAGCACCGGCGATGCACATGTTAATTAAAGGAGTAGAAACTGGTGGAGAATTGATAATCAACACATACACCCACTGCACTGACCATTTGCATCGCGCTGGTCAGGACAGCCTCCGAGGCTCTTGGTACATCGTATTTTTACACAGATGGTTCAATGACCCTTTGGTGGAAGTTTGCCCTGAGATTATTTCCAAACAAGcactttcaatttaaacaaaatgtaccttcttagtaaaaaatgtttttatagaagtggggggaaaaaagccaaAGTATTATTACATGATGATTTAGTGTTACACTTGACTAGTGTGCACAATGAAGTATGATTGAAACAATGTATTCTAAATTCCGCATCAGAATGAGGCTACAATCCTACAGACCGGCGTCAAGCTGCACAAAACCACTGGTTTCTTTTTTGAAGTTCTCCTGTAGGTTGAGGGCATTTGCACAAAGCCACTCGGCTGCTAAAGGAAAAGCCGCTGTGATCACGGAAGGTGTTCGATACCTCAGGCTATTCTGGGTCTGTTAAATCAGCCGTGGTCTCAGACCACCCAGCGTTGTTCTGGGCAGGTCAACCCAAAATGAGTGCTAATCCAGCTCTGTGGACCAGCTGAAGGTTTTTTTAGGCAACTGGTCCCCAGACTGGGCTCTCGTCTGCTGTTTGGGATGGCGTGCCTCGAGTGTTGACCCCACCTGACCTCTCAGCATCGTGACGTCCACATGCTGGCGTGTTCCCCAAGTCTTTGCCCTCGGTTTGCTGATGTCACTCACTCGGAACGCACCCGTGCCACTCCATCCGTGTTGTCTGCCACTGTGTTCTCACCGTCGCCAAACTTCCTGATCCGCAATGGACGAGTTCTCTGGTGTGGATTGGGCTCATTACCTCTGCACTGTAAAGCCATGAATCCGAAGAAGAACAGATGTAATGTTTGAAACATTTGATTAGTCTTTCAAGCATGTCACTTGTtgattcagttttttatttgtataatttaaaatcattgGTGTAGTTTACCGTGTCTCGCATATCCATTTTCCTTCTTGATGCAGTGAACCACTAGCAATAAGCACGTGTTTAACACAGTAGTACCATACATTTTTATGGCAAAGAATCAGATCATCCTCTTCTTAATTATATGGTGTGTgtggaaacaataataaagatattTTTGCGATCTTCA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107751 lncRNA upstream 125174 19258458 ~ 19258855 (+) True G86323
TU107735 lncRNA upstream 157261 19224453 ~ 19226768 (+) True G86309
TU107705 lncRNA upstream 230747 19153015 ~ 19153282 (+) True G86284
TU107691 lncRNA upstream 328926 19047049 ~ 19055103 (+) False AMCG00021472
TU107641 lncRNA upstream 704153 18679113 ~ 18679876 (+) True G86229
TU107802 lncRNA downstream 343 19392097 ~ 19394874 (+) True G86367
TU107824 lncRNA downstream 56975 19448729 ~ 19449107 (+) True G86387
TU107871 lncRNA downstream 194235 19585989 ~ 19587369 (+) True G86419
TU107908 lncRNA downstream 438062 19829816 ~ 19837813 (+) True G86454
TU107909 lncRNA downstream 460615 19852369 ~ 19894619 (+) True G86455
AMCG00021488 mRNA upstream 41205 19341820 ~ 19342824 (+) True AMCG00021488
AMCG00021484 mRNA upstream 76905 19299536 ~ 19307124 (+) True AMCG00021484
AMCG00021485 mRNA upstream 89250 19281051 ~ 19294779 (+) True AMCG00021485
AMCG00021479 mRNA upstream 136351 19232128 ~ 19247678 (+) True AMCG00021479
AMCG00021478 mRNA upstream 163755 19202878 ~ 19220274 (+) True AMCG00021478
AMCG00021493 mRNA downstream 30970 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021492 mRNA downstream 68710 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021496 mRNA downstream 78487 19470241 ~ 19471029 (+) True AMCG00021496
AMCG00021501 mRNA downstream 222441 19614195 ~ 19622221 (+) True AMCG00021501
AMCG00021505 mRNA downstream 521778 19913532 ~ 19918822 (+) True AMCG00021505
TU107757 other upstream 101114 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1134343 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2379898 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 2669991 16656644 ~ 16714038 (+) False G85787
TU107079 other upstream 2722147 16656644 ~ 16661882 (+) True G85787
TU107857 other downstream 108046 19499800 ~ 19501242 (+) True G86407
TU108101 other downstream 950856 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 986669 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 1007172 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 1275716 20667470 ~ 20667927 (+) True G86688

Expression Profile