RNA id: AMCG00021495


Basic Information

Item Value
RNA id AMCG00021495
length 2776
RNA type mRNA
GC content 0.60
exon number 22
gene id AMCG00021495
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19446086 ~ 19468782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAACCCATCCCAACCAATCGCAGCCAATCAGAAGCCGCCGCCGCCCGCCCCCCGCGGCGCTGTGGTCCAGCGCTATAACAGCCCCGGCGCAGGTCGCGACAGTAAGAAACCGGCGGAGCGGCAGAGCGGCGACACGGGAGCGACATGTCTCTGCAGGCTGAGTTCGAGAAGGTGGCGGACGACGTGAAGAAGGTGAAGTCCCGGCCGACAGACGAGGAGCTGCTGGACATGTACGGCCTGTACAAGCAGGCCACGGTCGGAGACATCGACATAGAAAAGCCCGGCATCCTGAATATGAAAGGGAAGGCCAAGTGGGAAGCGTGGGACTCCAGGAAAGGAATGTCAAAAGACGCCGCCATGAACGCGTACATCGCCATCGCCAAGGAGGTCATTGACAAGTACGGCCTGTGAGCACGGCGGCCCCCGCAGTGGCCCCTGCAGAGTAGTGCTTTCCCGAGGGACTCGGACACCCAGGCCCCTGGCACAATGCAAACACCGCCTTCCTCACCGTAGAGAGAGTTTTATATCGGTTCAACGACATTAGTTACCCTTTATCGAATAggatgttttgtaattttaacaAGTAACTTGAAcctaaataaaccttttttttattattatcgaaaagtatttttcttttattcatgattaaaaaaaaacatggcataTTTACATGAGGAAAATGGACAACCGGGTGTTTGAGTCCGCGGCCGAGCGCACCTTCCAGTACCAGAGCGCCCTGCCGCCGCTGCCCGTGCCCGGCCTGGAGGACTCGCTGAGCAAGTACCTGGACGCAGTGAAGCCCTTTTCCACGGAGGAGGAGTTCAGAAGGACCTCGGTGCTGGTGAAGGAGTTCGGGGAGGGCATGGGGAAGGACCTGCATCAGACACTACTGCAGAGAGCCAAGGGGAAGAGGAACTGGCTGGAGAAGTGGTGGCTCAGCAGTGCCTACCTGGAGGTGCGGATGCCGTCGCAGCTGAACGTCAACTTTGGGGGCCCGGCGCCCTACCTGGAGCACTGCTGGCCGGCGGCTGAGGGCACCCAGCTGCCCAGGACCAGCCTGGTGGTGTGGCACACGCTGCAGTACTGGGACCTGATCAGGACggagCGGCTGGCCGTGCACAAGGCTGGAAACACCCCCCTGGACATGGACCAGTTCCGCATGCTGTACTGCACCTGCAAAGTGCCCGGCATTGCCACAGACACCATCCACAACTACTTCAGGACGGAGAGCGAGGGAGACTGCCCCTCCCACGTCGTCGTGTTTTGCCGAGGGAGGGTGTTCACTTTCGACGGCGTGCGGGACGGACGCATCCTCACCCCCCCCGAGATCCTCAGGCAGCTCACCCACATCAGGGAGGCTTGTGAGAGGGAGCCGGAGGGGCCCGGCGTGGCGGCGCTCACCACTGAGGAGAGAACGCGCTGGGCACAGGCTCGGGAGTACCTGATCGCTCTGGACCCACAGAACCGGGCCACGCTGGAGACCATTCAGAGCAGCCTGTTCGTCATCAGCTTGGACGAGGCCCGGCCGTACTCCACCCCGGACAACTACACAAACGTAACGTTGCAGGCCCTGACCGGGGACCCCACCGTGCGCTGGGGAGACAAGTCCTACAACATCCTGTGCTTTGCCGACGGCACTTTCGGCTCCAACTGCGACCACGCACCCTACGACGCCATGGTGCTGGTGTCCATGTGCTTCTACATCGACCAGAAGCTAAAGGCCAGCGGTGGACAGTGGAAGGGCTCGGAGGCGGTGAGGGACGTCCCGCGGCCACAGGAGCTGGTTTTCAAGGTGGATACCAAAGTCCGAGAAGACATCGCCCTGGCCAAGCTGCAGTATCGACAGAGCGCCCAGGACCTGCAGTTGGTCTCCTATGCCTTCACTGCCTTCGGAAAAGCAGCCATCAAGAAGAAGCGCTTTCACCCGGACACCTTTGTGCAGCTGGCCCTGCAGCTGGCCTACTTCCGCCTGCACAGAAGgCCCGGGAGCTGCTATGAGACAGCCACCACCAGACGCTTCTACCATGGGCGCACCGAGACCATGCGCCCCTGCACCGTGGAGGCCCTGGAGTGGTGCCTGGCCATGCTGGACCCCTCCCTACCTGCGGAGAAGAAGCGCCAGAGACTGATGGCTGCAGCGTCCAAACACAACCGGCTGATGAGTGAAGCCCAGAACGGGAAAGGCTTTGACCGGCACCTCCTGGGTCTCTATCTCATCGCCAAGGAGCACGGCCTCCCGGTACCCAAGCTGTACCAGGACCCGGCCTTCTCCAAGAGtgggggaggggggaactTCGTGCTGTCCACCAGCCTGGTGGGCTACACCACTGTGCTGGGCGCAGTTGTGCCTATGGTGCGTCACGGATACGGCTTCTTCTACCGCATCAGAGATGACCGCATCGTGGTGTCCTGCACTGCCTGGAAGTCCAGCCCGGAGACTGACGCCCAGAGGCTGTATGACAACCTCAGCTCCTCCTTCCACGAGATGCTGCAGCTGCTGACTCTGGCCCAGCTGCGTCTGTGCCACTCCGAGACGCCAGACTGTGTTGCAGGTGAAAGACTCGAGGTAACGGGCTTCGGCCAATACAATGCAAACCTGTTAAAGGGCTTCGTGTCCTTCGGTGAGGGGTTTTGGAGGGGTCACACAATCGGCACCTTTTCGCTCTCGGTGTCCAACGCCGACGTGGCCTCGTCCAGCAGCAGGATCTTGGGGTTCCTGACAATGGCCCTGGCGATGGCCACACGCTGCTTCTGTCCCCCAGAGAGCTGA

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K05940 CROT; carnitine O-octanoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107752 lncRNA downstream 187231 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 292801 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 439654 19005616 ~ 19006432 (-) True G86253
TU107662 lncRNA downstream 527555 18918254 ~ 18918531 (-) True G86249
TU107657 lncRNA downstream 634939 18750672 ~ 18811147 (-) True G86244
TU107933 lncRNA upstream 431676 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 435214 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 443755 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 683438 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 812370 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021494 mRNA downstream 36590 19393011 ~ 19409496 (-) True AMCG00021494
AMCG00021486 mRNA downstream 62130 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021490 mRNA downstream 91695 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021487 mRNA downstream 106568 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021489 mRNA downstream 149187 19296483 ~ 19296899 (-) True AMCG00021489
AMCG00021499 mRNA upstream 4153 19472935 ~ 19482233 (-) True AMCG00021499
AMCG00021497 mRNA upstream 17846 19486628 ~ 19488734 (-) True AMCG00021497
AMCG00021500 mRNA upstream 31454 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021498 mRNA upstream 54746 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021502 mRNA upstream 118437 19587219 ~ 19610896 (-) True AMCG00021502
TU107755 other downstream 168063 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 178625 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 536178 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1197192 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 1519378 17926099 ~ 17926708 (-) True G86049
TU108097 other upstream 860640 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 889519 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 926830 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1253102 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1595076 21063858 ~ 21083570 (-) True G86808

Expression Profile