RNA id: TU107835


Basic Information

Item Value
RNA id TU107835
length 574
RNA type TUCP
GC content 0.56
exon number 4
gene id AMCG00021495
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19446086 ~ 19468782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCCCCGCGGCGCTGTGGTCCAGCGCTATAACAGCCCCGGCGCAGGTCGCGACAGTAAGAAACCGGCGGAGCGGCAGAGCGGCGACACGGGAGCGACATGTCTCTGCAGGCTGAGTTCGAGAAGGTGGCGGACGACGTGAAGAAGGTGAAGTCCCGGCCGACAGACGAGGAGCTGCTGGACATGTACGGCCTGTACAAGCAGGCCACGGTCGGAGACATCGACATAGAAAAGCCCGGCATCCTGAATATGAAAGGGAAGGCCAAGTGGGAAGCGTGGGACTCCAGGAAAGGAATGTCAAAAGACGCCGCCATGAACGCGTACATCGCCATCGCCAAGGAGGTCATTGACAAGTACGGCCTGTGAGCACGGCGGCCCCCGCAGTGGCCCCTGCAGAGTAGTGCTTTCCCGAGGGACTCGGACACCCAGGCCCCTGGCACAATGCAAACACCGCCTTCCTCACCGTAGAGAGAGTTTTATATCGGTTCAACGACATTAGTTACCCTTTATCGAATAggatgttttgtaattttaacaAGTAACTTGAAcctaaataaaccttttttttattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107825 lncRNA downstream 16953 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 17566 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 207205 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 312775 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 459628 19005616 ~ 19006432 (-) True G86253
TU107933 lncRNA upstream 431725 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 435263 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 443804 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 683487 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 812419 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021494 mRNA downstream 56564 19393011 ~ 19409496 (-) True AMCG00021494
AMCG00021486 mRNA downstream 82104 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021490 mRNA downstream 111669 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021487 mRNA downstream 126542 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021489 mRNA downstream 169161 19296483 ~ 19296899 (-) True AMCG00021489
AMCG00021499 mRNA upstream 4202 19472935 ~ 19482233 (-) True AMCG00021499
AMCG00021497 mRNA upstream 17895 19486628 ~ 19488734 (-) True AMCG00021497
AMCG00021500 mRNA upstream 31503 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021498 mRNA upstream 54795 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021502 mRNA upstream 118486 19587219 ~ 19610896 (-) True AMCG00021502
TU107755 other downstream 188037 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 198599 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 556152 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1217166 18247661 ~ 18248894 (-) True AMCG00021460
TU107397 other downstream 1539352 17926099 ~ 17926708 (-) True G86049
TU108097 other upstream 860689 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 889568 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 926879 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1253151 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1595125 21063858 ~ 21083570 (-) True G86808

Expression Profile