RNA id: AMCG00021497


Basic Information

Item Value
RNA id AMCG00021497
length 1701
RNA type mRNA
GC content 0.70
exon number 2
gene id AMCG00021497
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19486628 ~ 19488734 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGGTGGCGAAGGACATCAGCACCTACCACACTGTGTTCCTGCTCACCATCCTGGGGGGCATGGCCGTCATCCTGCTGATCCTACTCTGCCTGCTGCTCTACTACTGCAGgaGGAAGTGCATCAAGCCCCGGGCACACCACAGGAAGCTGACGCTGGGCTCGGCGCTGGAGAGCTCCACGAGGGACCAGGCCACCTCCATGTCCCACCTGCACCTGATCAGCGAGGCACACCTGGAGATGGTGTCGTGCGGCGAGGCCGACCTGCACACACCGATGCTCAGGCCCTCGTACACCGCTGCCTCCCGGGACTTCGGCTCCCGCCAGGAGCTGCTGTCTGAGCATGGGGACCCGGGCCGGAACCGCGGCTCGCTCAACAACCTGGCGTCCCGCGCCGCCCTCCTCGAAGACTACCAGAAGTCTGTGgagaccttcccactgaaggcCATCAGCTCCGGGGAGCCCTCCGAGGGGTACGAGTCTCCTGCCCGCGCGGACTGCGGCCGCAGCTACAGCTCCATGGCCTCGCAACCGCTGCTGGACAAGAGAGGGCCACCGGCGCAGGGGCGGGCAGTCAGCGGTCACCTGTCCCCAGACCGCCAGAGCACCGAGCCGCTGCGGACCCCGGACAGCCCCTGCTCGCCCGAGAGGGACGCCCTGGGGGACCGGCGGCGCGTGGAGGCAGAGTACCTGATGTCCCGCTCGGTGGATCACCTGGAGCGCCCCACGACCTTCCCCCGGCCTGGCCGGCTCACCTGCTGCAGCTCGGTGGACCAGGTGAGTGACGGCGCGTACCGGCGCGTGCTGCCCACCCTGGTGATCCCGGCGCACTACATGAGGCTGCCCGGGGAGCACCCATACGCCGGCCAGGCACTGCTGCTGCAGACCGAGGAGCAGAGCGAGCTGGAGACTATCCAGGCTGAGCTGTCCGCCTCGCAGCCCCCCGGCCAGCCCCCGCCGTGCCGCTCCTCCGAGCACCTGCAGCTGTCCTCCCAGGACCTGTCCCAGCGCGGGCGGGGGGCCGTGGTGCCAGAGTCGCTGTCCATCCCCGGCTCCCTGAGCGAGGCCGGCCTGGTGCAGATGAACGGTGAGGACCAGTTGCTGGCGGAGAAGACGCTGCTGGAGCTGCGGGGGGGCAAGCCGCTGCCGCACCCCCGTGCCTGGTTCGTATCTCTGGACGGGCGCTCCAATGCCCACATCCGCCACTCCTACATCGACCTGCAGCGGGCAGGCCGGGGGGCCGGGAGCAGCCAGGACGCCAGCCTGGACTCTGGGGTGGACATGCATGAGCCCCGGCTGGCCCATAGGATGCGTGAGCGCCGGGCCCGCAGCCACACCCCCGCGCCAACCCCCGCTGTGCCCTACACCCAGCTAGTGTTCGTGGACGACCTGGAGGACGGGGCGGAGCAGAGCAGCCCGGAGGACAGCGGCCCCCTGCTGGACCAGCCGCCTGacgtggaggaggaggaggatgaaggaGAGGGGGAGCAGCTGCGGGAGGACGGGGGTGAGGAAGAGGCCCCCTCACTCGGCCCGTTGCCGGAGACACGCCTCCCGACTGagccgcccccccccaccagcccccccaccccgcctgATGACGCCCCCTGCCTGGACGAGGGGCCGGACGACCAGGACGAGAAGAAGAGCCCCTGGCAGAAGCGCGAGGAGAGACCCCTGCTGGCCTTGAACCTGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107825 lncRNA downstream 37521 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 38134 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 227773 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 333343 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 480196 19005616 ~ 19006432 (-) True G86253
TU107933 lncRNA upstream 411724 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 415262 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 423803 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 663486 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 792418 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021499 mRNA downstream 4395 19472935 ~ 19482233 (-) True AMCG00021499
AMCG00021495 mRNA downstream 17846 19446086 ~ 19468782 (-) True AMCG00021495
AMCG00021494 mRNA downstream 77132 19393011 ~ 19409496 (-) True AMCG00021494
AMCG00021486 mRNA downstream 102672 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021490 mRNA downstream 132237 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021500 mRNA upstream 11502 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021498 mRNA upstream 34794 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021502 mRNA upstream 98485 19587219 ~ 19610896 (-) True AMCG00021502
AMCG00021503 mRNA upstream 279569 19768303 ~ 19775351 (-) True AMCG00021503
AMCG00021504 mRNA upstream 298080 19786814 ~ 19791172 (-) True AMCG00021504
TU107835 other downstream 17895 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 208605 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 219167 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 576720 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1237734 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 840688 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 869567 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 906878 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1233150 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1575124 21063858 ~ 21083570 (-) True G86808

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1328181 True 2877 lncRNA 0.51 2 NC_048577.1 31742726 ~ 31747322 (+)