RNA id: AMCG00021498


Basic Information

Item Value
RNA id AMCG00021498
length 6678
RNA type mRNA
GC content 0.53
exon number 32
gene id AMCG00021498
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19523528 ~ 19584960 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGGTGTTCCTCGGTCTGTGTGCAGCGTGGGTTCACTGGACTGGGACACAGAGGAGGCCGGGTCGGctgtgtgctctgtgctgtgcagctGTGTGCCGTGTGTTGCGCAGCTGTGGGATGCGGCTCCAGAGCGCGCAGACGCCGctgctcctcctcttcttcataGCACCAGCCGCACGCAGACGGACCGGCAgcagctctcctcctcctcagacTCGGGATTTGACGGCTCGGTGTTTTCTTCATTCCCCGGAGTGCTCTCGCCCATGGCAGCCCCGTCCGCCCGCCGCCTCCGGACACTGCTCCGCTCGGCTCCGCTGCTGTGGCTGCTCTGCCTCCGAGTCGCGCCCTTCAACCTGGAGGCGGACAACCCCACGGTGTACCAGGGGCCGCAGGGCAGCTACTTCGGCTACTCCGTGGACTTCCACAGCCCGGACGGCAACGCGATGAGCGTCCTGGTCGGGGCCCCCAGAGCCAACACGTCCCAGCCGGGGATCGTGGAGGGCGGCGCGGTGTACTACTGCCCCTGGCCCGCGGCGGGGTCGCACACCTGCCGGCAGATCCCCTTCGACACCACCAACAACAGGATGATCCGAGTGAACGGCACCAGGCAGGCCGTGGAGTTCAAGTCCAACCAGTGGTTTGGCGCTACAGTCCGGACTCACCAGGGCAAAGTGGTGCTGAGCAGTGAGAAGGACCCGGTGGGAACCTGTTTCGTTGCCATCCAGAACTTCAGTGCCTACGCCGAGTACGCGCCCTGCCGCACCAGAGAGCCGGACCCCGAGGGACAGGGATTCTGTCAGGCGGGCTTCAGTGTGGACTTCACAAAGGATGGAAACCTTGTGGTGGGAGGACCGGGAAGCTTTTACTGGCAAGGACAGGTCATCACCACCGGCGTCGCCGAGATCCTCAATGGCTACTCCGTCAAAAACCTGCTGCCGGAGGTGAAGGGGCAGAAGCAGTCGCACGCCGCCTCCGACGCCTACGACGACAGCTACCTGGGCTACTCGGTGGCGGTGGGAGAATTCACCGGAGATTCAGAGCAAGAGCTGATCGCCGGTGTGCCGAGAGGAGCGCAGAACTTCGGATACGTGGCCGTGATCAATTCAACAGACTTATCCTTCATTCAGAATTTCACTGGCGAACAGATGGCTTCGTACTTTGGCTACACGGTGGCTGTGTCAGACCTGAATGGCGACGGGCTGGACGACGTGCTGGTCGGGGCCCCCCTCTACATGGATCGCGAGTTCGAGAGCAAGCCGAAGGAGGTGGGCCGGGTCTACATCTACCTGCAGGAGGAGGAGCTGACCTTCGCCGACACCATTGTACTCTCGGGGACAGAAACATCGCGGTGGGGGCGCCATTCGCCGGAGCGCCGAGGCCGGGTGCTGATCTACAACGGGCACAGTGGCGGCCTGAGGCTGCAGCCCTCGCAGGTCCTGGAGGGGTCCTGGGCCTCGCAGACACTGCCGGCTGGGTTCGGCTTCGCCCTGCGGGGAGACTCAGACCTGGACAAGAACCAATATCCAGCCCGTCCTGTGGTGACCGTGGACGCCCAGCTCCTGCTCAACCCCATGATTCTCAACCCCGAGAATAAAACCTGCCGGCTGCACGACACCGACACCATGGCGGCCTGTCTGACCGTGAGAGTCTGTGCCTCTGTGTCGGGCAACGCCATCCCAGACACCATCGCGCTGAGCGCAGAGCTGCAGCTGGATTGGCTGAAGCAGAAGGGCGCCGTCAAACGCGTCCTGTTCCTGGAGACCCATCAGCACCAGCACATCGTGAGCTTCACCCTGCAGAGGACCCGGCCCCACCAGTGCCAGAGCCTCGTGGTCTACCTGAAGGATGAGACAGAGTTTCGGGATAAACTATCTCCTATCAGCATTGCGTTAAACTACAGTCTGGATGAGTCTACTCCGCCCTCGGGGTCGGCGCTGAAGCCCATACTGAACTATTACAGGAAGCCGTCCTTGCAGgagcagGCCTACATTCTCCTGGACTGTGGAGAAGACAATATGTGCATCCCTGATCTCCAGCTGTCTGCCAGAATGGACCGAGAGCAGCTGACTATAGGAGACGACAACCCGCTCATGTTGACCATCAACGCACAGAACCAAGGGGAGGGGGCCTACGAGGCGGAGCTGCACGTCCTGCGGAGGCTGAACTGTGAGTACCGGATGGAGAACATGACCCGGCTGGTGGTGTGCGATCTAGGAAACCCCATGGTGGCGGAAACTGATCTCTCCGTGGGCCTGCGCTTCTACGTCCAGCGTCTGGAGGAGGTGGGAACTGACATCACGTTTGACCTGCAGATCAAGAGCTCGAACAAGGACAACTCGAAGAGCAACCTAGTCAGCCTGACACTGAACATCACGGCCAGGGCCCACGTTGACCTGCGCGGCGTCTCTCACCCCGCCCAGATCATCCTGCCCTTCCCCAACTGGGAGCCCAAAGAGAAGCCGCTGCACAACAAGGGCCCCAGTGCCATCAGCGACACGCTCCTGGAGGTGGGCTGGCCGAACCGCTACCATGACGAGTTCCTCCTGTACGTGTTCGAGATCCAGACGGACGGTCCGGTCAAGTGCAGAACCAACTCCTCACTCAACCCCCTGGACCTGGAGACGTCAGCGCTCCAGGACACGCCCGAGCTGCTGGGATTCCTGCGCAACTCCACGCCACCCCCCCATGCTCTCCGCAAGCGTGACGTCCGAGCGGCCGAGTCCTACAGCAGCAAGACCCTGAACTGCACTAACATCCACTGCCTGATGGTGGCGTGCCGCGTGGGCCGGCTGGACAAGGGCCAGAGCGCCGTGGTGAAGGTGCGCTCTCGACTGTGGGCTCACACCTTCCTGCAGAGAAAGAAGTACTCGTACTCCCTGAACTCCACAGTGTCGTACAAAGTCTTGGACATGCCGTATCGGATCAAGCCAGCCCGGCTGCCGGAGGAGTCCAAATCAATAGGCACCTTTGTGGTCTGGGCCACCCCCGACGTCTCGTTCGCCATCCCCCTGTGGGTCATTATCCTGGCCATCCTGCTGGGGCTGCTGGTTCTGGCCATTTTGACTCTAGTCATGTGGAAGTGTGGCTTCTTCGATCGTGCTCGGCCTCCCAAAGACGACGTGTCCGACCGAGAGCAGCTGACGGCGGAGAAATCCACAGAAGCATGAGGCGGCCGGCGGATGTGGGCGGCCGGCGATGAGGGAGTCCGGTACTGTCCAGTACTGTTTGTGAGGGATCCTTTCGGGAGACGCCAAAAAAACTGCCTTTCAAGTCTTCCCTGTGACTTCATTTTCCATTAACGAATCGAAATCTGTGAGGTGAACTGCCAGCCAGCGGCCGCTGTGCTCCACGGGCTGCAAAACATACTGCTGACCCGACCCGGGAGCGACGGCCGGCTCTCACAGACTCACACAGCGGTTCTGCTCTTCTCGCGGAATTTGACATGAGTGACACGACAGGAAGACAAGACTGTTACATTCTTGAGCTCATATCTTATTTCTTCTGAGctgttgtacatttttttgCAGCTTTTTTATCTTGTTTCTTCTTTACTCCTGTTATACGTGGAGCACGGCTGGTTCCTGTCCTTGAGAATTTTGTTAGTTTTACGGTCGAATGTTAGTTTTGGTGGCGAGTGATTGGGTCCGCACAGATCTGAACTACATGAGCACTGGACTCTAACACGGCACAGCTTCCAGAAAAACACTTCACCCTCCATGGAAGTGACAgagattcattcattcattttttaaactattttccataaaatgtaatactttgaCTCGTGTTCTGAAACCTGTTTAACTGAAAAGCCCAGAAGCATCCATTGCAGTTTGACTGTGAAACAGATGACGACAGTGTGGACTGTGGCCAGTTGGTCACCTATAATCTGACGGTTACCCTGGCTATGGTTGTGAACACTTTCAGATTCTCAGCCATTTCTCAGCAGTCTGTTCCAGGGGCTCCCAGAGATATTCAGCAGCGGTGCTCTTACCCAGCATGCACTTCCCTGCGAGGTCTGAACCCCCAGGTTTGTCTCTTCATCGATGTGAAGGTCACGTGATTGGCAGGAGTGAACGCCTGGGCGCGGATCTGGACTGTGGTGCGGCTGCCGGGAGGCCCGGGGCTCTGCACCGCTCTGTACAAGCGGCTCTGTCTGATATCAGTTGATCCTGGGCGAACGCCAAACCCAGAGGTTGTAGttcattctgttctgttttgtttgtttgtttgttttcagcctGATGTTCAAATCCAGTGATGAAGTACcagagaaattaaacacaataaagtgTCTGAGCAGCGAAGCCCGTGGTGCCGATGTCAGAATCTCTGCAGACGAGCTTTTTAcaacattattgttttatatgtttttcaagaaaatatagaacaaaCATGGATTTTTCTCTTTACTAACACATTGGAATCTACCTGTACTTCCCATTTGGACCTGTGCCTCCCGTACAGGACCTGTATCTCCCTTACAGTACCTCTGCTATCCTTACAGGACCTGTAATTCCCTAATTTGTGTGCACAGATTCTCTCTGACAGCAGCCCTCTTGAGTTTGGTCTTTCTTGAAAGTATAAATCATCACAAACCCAATTCACACCTGGATATGTCAGTCCGGTTCCCCATGTGCTGCAGCAGGATGACTTTGCCTCATCCACAACCGAGCagtgacagaaacacacaaacacacaacacgtGAGCAAACCCAGCAGGGACAAACATCCCGAGAATGGTATCTTGCGCTCAGAATTGCTGTGTCTGTGACACTTTTTCATCTGcagaataaattattttgtatttattgtgtttacgAAGTTGTTTTGAGGTTTTTCACAGTTGTGGTTGTAATTCTTGGTGTCGTCCACAGGGGGGCAGTGTAGAGAGACAGTAGGGCTGTAGAAACAACACTTCCATCTTTTTTGTCAACTTATTTATTCTGACATCTTATAACAAAGTCACCATGGTAAACATGGAGCAGCCTCCTCCGTTTCTCATCTTGGCCCATTCCTTCTGTGCTCCTcagtttctgaagggaaaataatttttcagaaaaatacacTGAAGTTTTCCATGTTATTTAGCGGATAATGTCTTTAACCGTGTTCCTCCAGGTGAACACTGCACTGTGGGTCTCGTCCCTTGTGTTAGTCAGGTTGCCGAAAAAATGACAACCTACACAAGAACAGCCTTAAAACAATCTCTACACAAAGTACAACAAGGAGCGTCTGCTTTCAATGAGTAGAGAGGGACTCTTAAAATACAGATCTGTCAACAGTCTGAGCTGCTCACGTTTTAATTTCCATGACTGCCAGCAGAAACTTCTCTTCATTTTCTCAAAAACGATCCCAGTCCGATATTATTGATGTTTTGTACTTATTCTCCCCTGCGACGGACGACCAGAAGTGTTCACATGAAACTCCCAATCGCCACGTTATGCCCGTTACACAGCCTCGATGGCGTTCACAGAAAAGTGAGTTTAGCATCAGAGCTCCTGTCAATTACACAAGGTTTTTATTCAGTTGAAATAAGAATCGGCTCCTCTGGACCAGTTGTGTCCAGTTATTTGCTTCAGTTGTGGTCCTGGTTTTCAATCGGCTAGAGAACTCAGAAGGAGCTCGGACCTTTTCCAGTCCAGGTCCAGAGTCAGTTCAGTGTGTTTTGCGCTGTTTGATGTTTGAGGTCAGTTCTGGGTCAGTGTCTCTCCCAGTTCGATGTGAGGCCGTGCCTTGTAGCTGCTGCTTATTTTAagactttaaaacacaatatctGAACAAAGTAGAGTAAGCGTCTGCCATGTTGGTTAATGCACATTCAGGAACATCTTTGTGGAAGGGAAACATCCATTTATATGtgcaatatttaatatactCAAGTTCCTGCAGCGTGTTTACACCGGTTTATAATGTGTCTGTTGTCTGTTTGAATCCTAACAGAGTTGTGTACATAGTTTAGTGAGTAAATTAATCTGAGATTATTAGGCTGGGCTGGTTCTCCTCTCTGAGCAGTAAAAGGGCACCGatctaattataataaattgccCCATTagtcctctctgtgtcctctttctgtattttaatccaATTGCACAGGGCTGTCGAGAAATATTGGCGATCACAGAAGCACGGTATTGATTTTGTAGGGAATTTCTAAGGAGAGGAACTATTGCCTGGCTgagcaaaaaataacattatttctgaaTTTAATTAACATCCCTGGGATTTAAGCTGTTCCCGTTTCACAAGACAAAACCTCTTCACTGCCTTTTCTCCAGGCCGCCTGCAGCTGTGCCAGGTGCCACACTGTGCCAATGAATCCCAGCCTGTGGATCAGCCGTTTCTCAGTCACTCTCTGCTCAGTTTCAGGGTTGTTTTCAGGGTTTGCAAGCCGTCATGGTGGTTTGTTTGTGAGGTGGGACAGTGCATCTGTTTAAAGTGCCTCCCAGTGGTGTCCTCACACAGAAAGCTGATCTGTCTGTCCTCCTGTGTCCGTGTGAAGGCCTGCCCTGAAGACACGTGTTCACCGGACCGGCCCGTGCTTGAATGTGTGACTCTGGGTTTAGAGTAGAATGAGAGCTGTTAGTTTATGAGCAACTGTATATATCAGATAAACAGACcactgttatatattttgtgtgtttttgtaataaagaataaagctgtag

Function

GO: NA

KEGG:

id description
K06584 ITGA8; integrin alpha 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107825 lncRNA downstream 74421 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 75034 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 264673 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 370243 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 517096 19005616 ~ 19006432 (-) True G86253
TU107933 lncRNA upstream 315498 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 319036 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 327577 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 567260 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 696192 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021500 mRNA downstream 19963 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021497 mRNA downstream 34794 19486628 ~ 19488734 (-) True AMCG00021497
AMCG00021499 mRNA downstream 41295 19472935 ~ 19482233 (-) True AMCG00021499
AMCG00021495 mRNA downstream 54746 19446086 ~ 19468782 (-) True AMCG00021495
AMCG00021494 mRNA downstream 114032 19393011 ~ 19409496 (-) True AMCG00021494
AMCG00021502 mRNA upstream 2259 19587219 ~ 19610896 (-) True AMCG00021502
AMCG00021503 mRNA upstream 183343 19768303 ~ 19775351 (-) True AMCG00021503
AMCG00021504 mRNA upstream 201854 19786814 ~ 19791172 (-) True AMCG00021504
AMCG00021508 mRNA upstream 320983 19905943 ~ 19909673 (-) True AMCG00021508
AMCG00021509 mRNA upstream 366057 19951017 ~ 19962097 (-) True AMCG00021509
TU107835 other downstream 54795 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 245505 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 256067 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 613620 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1274634 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 744462 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 773341 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 810652 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1136924 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1478898 21063858 ~ 21083570 (-) True G86808

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019883 False 4544 mRNA 0.48 30 NC_007127.7 28383758 ~ 28512860 (+)