RNA id: AMCG00021499


Basic Information

Item Value
RNA id AMCG00021499
length 2407
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00021499
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19472935 ~ 19482233 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGAtgatgtagtagtagtaattaattaagtaatagtAGGAGTAATAGTAGGAGTAGTGGTAGTAGTTTTTCTGAACGGATCCTATTTCCCCGCATGTCCTCACCTGCGATGCAGACACGACAGTTATTTTGCTCATATTTATAAACTCAATTAGACGGTACGCGCTCATTGTCGGTACATTTAACACGGAAATGCCCTTTTAGTCTTTTTCTCGGTTTGTCTGTAAGTTTCAACCGATTATGTCAGACTTTGTCACATGGCTGAGTTAGTCTAACCTGGCCCTCGACGTGTCGCAGGGCCACAGGTCCCCCGGTGCGTCTGCTCACTGGGATGTCAAGTCTGACGGAGGCACAAAGGGCGATTCCACGttgcgcagatgtgcgcaggtctgcgcggctccaccaataggatcgctgggattctgcagGCTCTGTGCAGATCAATACCGCGACCGAAGCGCCGCATCCTCCGCAGCCTGTGGCCGCTCTCCCTGCGCAGACCGCGGCGCTGGGGAGGACGGCGGGTAGAGGGAGCTGTTGTGTGTCTGCGCTCtttgtgcgtgtgcgtgtgcgtgtgtgtatgtgtgtgtttttatcccCCTCCTCTCCGTGTGTCTCTCCCTTATTACAGATTTTTTCAGCATTTCTCTCCATGATGGCGGAGGACAGCGAGTCTGCGGCCAGCCAACAGAGTCTGGAGCTGGACGACCAGGATACGTGCGGCATCGACGGGGACAACGAGGAGGAGAATGAGCACCTGCAGGGGAGCCCAGGAGGAGACCTGGGagccaagaagaagaagaagaagcaaaagaggaagaaggagaagcCCGGTTCTGGAGGAACCAAGTCGGACTCTGCCTCAGACTCCCAAGAAATAAAGAACCCAGCCATCCCCATGCAGAAGCTGCAGGACATCCAGAGAGCCATGGAGCTGCTGTCCGCCTGCCAGGGTCCCGCCAAGAACATCGATGAGGCCACCAAGCACAAGTACCAGTTCTGGGACACCCAGCCTGTCCCCAAACTCAATGAAGTGGTCACCACCCACGGCCCCATCGAGCCGGACAAGGAGAACATCCGCCAAGAGCCCTACTCCCTGCCCCAGGGCTTCATGTGGGACACGTTGGACCTGGGCAGTGCCGAGGTGCTGAAGGAGCTGTACACGCTGCTGAACGAGAACTACGTGGAGGACGACGACAACATGTTCAGATTTGATTACTCACCCAACTTCCTCAAGTGggcGCTGCGGCCCCCTGGCTGGCTCCCCCAGTGGCACTGTGGAGTGCGTGTCTCGTCCAACAAGAAGCTCGTGGGCTTCATCAGTGCTATTCCTGCCAACATCCGCATCTATGACACTGTGAAGCAGATGGTGGAGATCAATTTCCTGTGTGTGCACAAGAAGCTGCGGTCGAAGCGCGTGGCACCGGTACTGATCCGTGAGATCACACGGCGGGTCAACCTGGAGGGGGTGTTCCAGGCTGTGTACACAGCCGGTGTGGTGCTGCCCAAACCTGTCTCCACCTGCAGGTACTGGCATCGCTCTCTGAACCCGAGGAAACTGGTCGAAGTCAAGTTTTCCCACTTGAGCAGAAATATGACTTTGCAACGAACAATGAAGCTGTACAGATTACCGGATGCCACCAAGACCGCCGGGCTGCGGGCCATGGAGAAGAAGGACGTGAAGCAGgtgcaggagctgctggagaagTACCTGAGGCAGTTCCACCTGGGCCCGGTGATGGACGAGGAGGAGGTATGCCACTGGTTCCTGCCGCAGGAGAACATCATCGACACCTACGTAGTGGAGGGCCCCGGCGGAGTGCTGACGGACTTCACCAGCTTCTACACGCTGCCCTCCACCAAAGGCTTTGACGTGTTCAATGCTCTGGACTTAATGGAAAACAAGACATTCCTCGAAAAGCTGAAGTTCGGTATAGGAGACGGAAACCTGCAGTATTACTTGTACAACTGGAAGTGTCCCCCCATGGATCCCGAGAAGGTAAGCGCTGTCCTGCGTCCTGCCCGTGCTGGGTGGGCCTCGTGCTGCAGTAAGCTGTCCGTCCACAGACGCCCCCCGACACGACGCAGCGAGATGGAGACGCACTCTGACTTCTGCCCTCTGACCCTGGATTTGCTTCGCGGGAGCAGCAGCGCGCCAATCTGAAACGATCAAGTGAACAGAAACCATCGCTTCACGCCGTCCTCCTCGGTCCGGTTTATTTAACATGAGAACATTATTTCGCGTCACCGGGAAGCGGCGCCTATTTTAACCATTTACATCCTGAATGTGAAATCAAAGACTGCTCGAGACTgaatttcataaatatattttgtccatCTGATCAAGGAATGGAGTTTTTCATTGTCTTAAatccacacacgcacacacacacgagcgcacacaca

Function

GO:

id name namespace
GO:0006499 N-terminal protein myristoylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004379 glycylpeptide N-tetradecanoyltransferase activity molecular_function

KEGG:

id description
K00671 NMT; glycylpeptide N-tetradecanoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107825 lncRNA downstream 23828 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 24441 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 214080 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 319650 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 466503 19005616 ~ 19006432 (-) True G86253
TU107933 lncRNA upstream 418225 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 421763 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 430304 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 669987 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 798919 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021495 mRNA downstream 4153 19446086 ~ 19468782 (-) True AMCG00021495
AMCG00021494 mRNA downstream 63439 19393011 ~ 19409496 (-) True AMCG00021494
AMCG00021486 mRNA downstream 88979 19376411 ~ 19383956 (-) True AMCG00021486
AMCG00021490 mRNA downstream 118544 19344966 ~ 19354391 (-) True AMCG00021490
AMCG00021487 mRNA downstream 133417 19307357 ~ 19339518 (-) True AMCG00021487
AMCG00021497 mRNA upstream 4395 19486628 ~ 19488734 (-) True AMCG00021497
AMCG00021500 mRNA upstream 18003 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021498 mRNA upstream 41295 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021502 mRNA upstream 104986 19587219 ~ 19610896 (-) True AMCG00021502
AMCG00021503 mRNA upstream 286070 19768303 ~ 19775351 (-) True AMCG00021503
TU107835 other downstream 4202 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 194912 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 205474 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 563027 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1224041 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 847189 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 876068 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 913379 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 1239651 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1581625 21063858 ~ 21083570 (-) True G86808

Expression Profile