RNA id: AMCG00021503


Basic Information

Item Value
RNA id AMCG00021503
length 3375
RNA type mRNA
GC content 0.60
exon number 5
gene id AMCG00021503
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19768303 ~ 19775351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTGAAGGAGCTCAAGCACCGGGAGTTTGCACGCAACGTCGCTTCCAAGTCCTGGAAGGATGAGAAGAAGCAAGAGAAGGCCTTGCGCCGCCTGCACCAGCTGGCCGAGCTCCGCAAGCAGTCGGAAAGTGGTCCTGGAAGTGGCCCCAAGTTCAGGGCCACGACAGTCGCAGCCGAGAGTCAACGTCCAGAAAACCTCTTCTCTGAGAGGGACCGTGGGGTCCGGAGTCACCACATCCACTTCACCCCGGGGGACAGGGCCACCGATGCGTCCTGCAGGGGTCCCCAGGAGCGTCCAACCCCCAGAGAGCAGAATCCCGTCTCCGACAGCCGGCCTGGCCCACCCCGGCCCGCTCCCGACTACAGCAGCCAGCGTGCCGGTGTCTCCTTCTGCTTCTCCAAGAAGGCCCAGCTGAAACTCGAGTCATCAGCGTCGGTTTTCAGCGACAACACCGAGGAGGCCGGTGACCGAGACGCCCTCACTCACAGAGGGAAGCCGGGCCTGGACGGCTTCAGGGCCTACGTTTCCTCCATGGCGGATTGCGCCGTGGACGTTATGGTGGAGGAAGGGCAAGAGGATGAAGAGAAGTGCCTGGAAACAGAGCAAAATCCCTCGGCACAGGCTGCCACACAGAACGAGGAGCCAGGTTTTCCCTTAATGGTGATCCCGGACTCTCTGGAGCTTTTGGATTTAGATCAGAGACTGCGGGAGCTGATCGCAGACCCAGGTACCAACAGCACTGAGCTGGATCAGACCGGCTGctccactgagagagagatggactgTAAAGATGCAGCCGCTGACGGAGGTCCAATCCACCTGCAAAGGAAATCTCTCATTTTGGAGCATCTTCAGATGGACCCCAGCTCAGAGCCCGTCTGTATCCAGGACACCGAGGAGACCATAGACTTGCGTGGTCACATGGTCTCGAGCGTTGAGGTAGGGGACGTGGAAAGACTGGGGAAGGAGCGTGGAGAACCTGATGGTCCGCCTAACAAGAAAACGGGTCCCTTCCTGAACGTCCTGAACAAAGACAGGACCACGATGCTGAAGTGGCCGTCGGAGCTGCTTCTGTACACAAAGACCGAGCCCTTCGTCTCCTACAGCTGCAACCCCCTGTATTTCGATTTTAAGCACtccagaaacaaacagaaagcacATGCCGACACAAACAGAGCCGGAGAGGATTGTTGTCTGTTGAAAGCGGCTAATGCGGGGAACACAGATGCAGGCACTGAACACCGCAGCTTGGGAGCAGTGGAGTTACAAAGCCACAAACCGCCAGAACATAAATTAGACAGTTTCAAACCAAAGAAGGGAAATTTCTACAAAGCATGCAAATCTCCAAAACCTCACTCAGAGGCTGCCAGTAGAGCGAGCACTCGCTGTAAGCACAACGTCTCTCCCCAGTTGGATCCCGCAGGAACAGAGACGGCGGCGCCTGACACGTCGCACAGCAAACACACGCGATCCAGAattggaaagagaaaaagatcTGTGAAAGAGGAGACTTCAAACAAGAGCAACACGGCAGAACAAAGTAAGAATGGGCTGATAAACTCTCCTGGCGATACGctgggtaaaaacaaaaagcgcAAAATCCTTCAATTCAGTGCTGAGAACCATAACAAGGACGTGTCTTCAGAGCAGGCACCCACAAAGACACGGCCAAACAGTGATGACAATAATCGCCACTTTAAGTGTGACTCAAGCACCAGCACCCACAGAGAGGAGAGCGGCTCTCAGCCTCCCAGCGACAAGTCGGGCTCCGGCAGCAGCTTTTCCGATCTGGAGACAGACAGCGAAGACGGCTCCTGGGGATCCGGGGGGTCCTCGTCCTCGTGTGGCTTGTCCTCCAAGAGGGGCTCTAGCTGCTCGGAGACGCTGGGCAGAGAGTTTTGCTGCCAGTCAAGTGATGAGAGCTCCTGTGCCGAGGCAGTGCCAGGCGGGGCGAGGGAGCACGGGTGTCACCAGGACCACCGGGGTGCCCATCGCCGCAAGAGGAAGAAACACGCCTCGTCCTCTGAGAACTCCAGTGGCACCGACGGGCCCTGCaggaagaggagcaggaggCTGAGGACAATGACCAGCAGGAGGAGACACCACTCTGACAAATCAGGGGCCAAACCCCAGTGTTCGCCAAGCCACAGTGGCTCCCCTGGAGGCAGGAGGCCGAGCCAGGAGGGGTCTCGTTCATTCTCGAGAGACCAGATTTTTTCCCTCAAACCTCCGGTGGTCAGCTGCAACAGAAAGATGCTGAAGGAGGCGGGAATTGCATCTAGGACACAGAGCAATCACGATCCACTTACCAAAGCCGCCCGCAATTCGCCTAATGTGAGTGTGGTGCCGCCACGGCTTGTGGAGAGATTGGCCAACCGCAAGGGATCTCCGGGTAAAAAGGGGAATAACGCAGCTGCTCTGCCGCTGATAGGCAAGTTTCCGGCCGTCAAAAGGCACGTGAAGAAGGTAGAGAGCGATAGAGTTAGAGGCAACCTTGGCAAACCTCATGGAGAGGCAGCAGACAGCAGTGCTGATCTCTGTAAGGGTCAGAGTCCCCTGTCAAGAGACAAAGGCACGGACAATTCCCCCTCTGCTCCCAGCAGGAAACACAGCCCGGAGGCCGACGGGCAGGACCCTACAGGTGGTCCTGAGCGGGGTGCGCTGCCTGGGCCCCCTCCGTGCGAGACGGCCATGTTCACCATGCACTCAGTAGAGCGGGAGCCCAATGTGCCACCGAATCCCAGTGCGAACTCTTTCCAGGAGCCACCGGCATCCATTCCCCAGACAGGCCACCCTCGTGCCGCGGCTCTGCAGGGGGACTCTACAAACCCTGATGAGATCGACAAGTACCGGCGGCTACAGCTCCAGGCGCAGCAGCAcatgcagcagcagctcctgggGAAGCCGGTGAAGGTGCTGCCGGCCCCCGCAGAGGTGCACAGCTTCACCCCCGCCATGCCCTCCTTCCAGCCCATGCCCCTGCAGCCAGCGGGCCCCGTCACCAGCATCCAGCAGGCCCTACTGCAACACCGCGCCATGGCAGCCTTCACCAGCACGCTGGGCCCCCACGCCGTGCCCCCGGCCCTGGCGCACCTGCACCCCCTCCCGCAGGCGCACTTCGCCCCGCTCTCCCTGTCCCCGCTGGGCCCCGCGCTCTTCCCAGCACACCCCGCTGCGCTGCTGGCCGGACACCCATTCCACCTGGTCCCCGCCTCCTCCTTCCACCCGGCCCACCTGGCCCTGCACCCCCTGCCCCACGGCACGCTCCTCCCAGCGCTGCTCACCCCCAGCCCGGGGCTGCAGTTGCACCCGCTGCTGCACCCCCTGTTCCCGGGACACGACCTGCCCCCCCACTCAGGCCACAGCAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107825 lncRNA downstream 319196 19448729 ~ 19449107 (-) False AMCG00021495
TU107823 lncRNA downstream 319809 19446417 ~ 19448494 (-) True G86386
TU107752 lncRNA downstream 509448 19258557 ~ 19258855 (-) True G86324
TU107706 lncRNA downstream 615018 19153005 ~ 19153285 (-) True G86285
TU107666 lncRNA downstream 761871 19005616 ~ 19006432 (-) True G86253
TU107933 lncRNA upstream 125107 19900458 ~ 19900836 (-) True G86474
TU107929 lncRNA upstream 128645 19903996 ~ 19912403 (-) True G86472
TU107936 lncRNA upstream 137186 19912537 ~ 19918803 (-) True G86477
TU108002 lncRNA upstream 376869 20152220 ~ 20152767 (-) True G86530
TU108082 lncRNA upstream 505801 20281152 ~ 20281596 (-) False AMCG00021514
AMCG00021502 mRNA downstream 157407 19587219 ~ 19610896 (-) True AMCG00021502
AMCG00021498 mRNA downstream 183343 19523528 ~ 19584960 (-) True AMCG00021498
AMCG00021500 mRNA downstream 264738 19500236 ~ 19503565 (-) True AMCG00021500
AMCG00021497 mRNA downstream 279569 19486628 ~ 19488734 (-) True AMCG00021497
AMCG00021499 mRNA downstream 286070 19472935 ~ 19482233 (-) True AMCG00021499
AMCG00021504 mRNA upstream 11463 19786814 ~ 19791172 (-) True AMCG00021504
AMCG00021508 mRNA upstream 130592 19905943 ~ 19909673 (-) True AMCG00021508
AMCG00021509 mRNA upstream 175666 19951017 ~ 19962097 (-) True AMCG00021509
AMCG00021516 mRNA upstream 430971 20206322 ~ 20207476 (-) True AMCG00021516
AMCG00021515 mRNA upstream 499707 20275058 ~ 20279375 (-) True AMCG00021515
TU107835 other downstream 299570 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 490280 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 500842 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 858395 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 1519409 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 554071 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 582950 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 620261 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 946533 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 1288507 21063858 ~ 21083570 (-) True G86808

Expression Profile