RNA id: AMCG00021505


Basic Information

Item Value
RNA id AMCG00021505
length 2946
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00021505
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 19913532 ~ 19918822 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTTGCAGAGATGACCAGCAACTCCATCGCCATGACTGCGCCCCGGCCCGGCCCACAGAGTAAGCTGGGCACCGTGTGCATCTTCGGCACAGGGGACTTTGGCCGCTCTCTGGGGCTGCGGCTGCTGCAGGCCGGGCATGCCGTGGTGTTCGGGAGCCGGAGCCCCGAAAACGCCAGCCTGATCCCTAAGGAGGCACAGGTGTTCGGCCATGTGGATGCCGCACAGATGTCCCGGGTCATCTTCGTCGCCGTGCACCGCGAGAACTACGAGTTCCTCGGCCAGTTCTCCTCAGAGCTGGCGGGAAAGGTCCTGGTGGATGTCAGCAACAACCTGAAGCTCGATCAGTACCCGGAGTCCAACGCAGCGCACCTGCAGAGCCTGGTCCCTGCGGCCCACGTGGTCAAAGCGTTCAACACTGTGTCGGCCTGGGCCCTGCAGTCCGGGGGGCTGGACGCCAACAGACAGGTGTACGTCTGTGGAGACGACTACGAATCCAAGCAGATGGTGATGGACATTGCCCACAGCCTGAACCTCactgccctggacaagggctcTCTGCTGGCCGCCAGGGAGATCGAAGACTTACCTCTGCAGCTCTTCCCCCTGTGGAGGATCCCCATGTACATCGCCACGGGCCTCACTGCTGTCCTCTTCCTGTACTGTGTGGTGAGCGACGTCGTCTACACGCGCGTCACCAAGGGCAATGACAACTCCTTCCGCATCATGATCTCCCTGGCCAACCGTGTCTTCCCCATCGTGTCCCTCATCATGCTGGCATTGTGCTACCTGCCCGGGGCGCTGGCCGGCTTCCTGCAGCTGCACAACGGCACCAAGTACAAGCGCTTCCCAGAATGGCTAGACCGCTGGATGCTGTGTCGGAAGCAGCTGGGCCTGGTGGCGCTGGCCCTGGCCTTCCTGCACGTCCTGTACACCCTGATCATCCCCACGCGGTACTACGTGTGGTTCAACACGTACAAGTACACCGTGACTCAGgaggAGGGGCTTATTCCTCCTCCTTATTCCCCTCAGCAAAATCACCTGTCCACCTTTCATCAGGCGAGGGAGAATAATACAATCACGTTTGATTACACCAGAGCCTGGAGAGGCGATTCCTACTTATCGCTGGGGATTCTGGGATTTGGACTGTTCGTCCTCCTTGGAATAACATCTCTGCCCTCTGTCAGCAACGCCGTCAACTGGAGAGAGTTCAGCTTTGTGCAGTCCAAGCTGGGCCACCTGACACTGCTGCTCTGCACCACACACACCTTCCTCTACGGCTGGAGCAAGTTCTTGATGCCCCACTACTACCACTTCTACCTGCCCCCCGCCTACATGCTGTCCCTGGTCGTCCCCTGCATCGTGTTGGTCCTCAAGTTCATTCTCATAATGCCCTGCGTGGACAGGGTCGTCATGCGCATACGCCAGGGCTGGGAGAGGAAGTCGGTGGAGACGCCGCACTGGAAGGACAACAAGAGCAGCCGGCCTCTCGTCCTCTAGGCACTCAAGTCAGCGTTAGGGTTTTTTatagctgtgttgtgttgtgtttctctgGTCTTTCCCTTCACTCTGAGTAGCCACGCCTGGGACCTTGAAACCCACACGCAAGGCCAGTCTTCACGCAGCCACAGTCCCCACAGTCCCGCATCCACAAGTCGCGCAATTTGCATGGCTCAGAGCGAAGGGGCTTCCCGTGTTGCTCTGTGAAGCAGGACACGCTTGACAGCAGTGCGTGTGAGAGGAGCAGACCCCGGGCCAGAGCGACATCCCAATGCAGCATACATTCACAGAACAGCTCAAACCTCTGGACACAGCCCTCGATCGATCATGTTGACACAACCGACGACAACTGCTGtgagaaatacataaacaaacaaataaatatatctgacagctgataaaataattataacattaataataataataataataataataataataataataataataataataggaagtCAGACACTGCAGGCTTTCCTCTCCTCAaagacattatttatatacCTTTTCAGGCAGAATATTGCATTCAGTCCCACAGCCTGCTGTGAAGATAAAGACACAGCGACTCAGAGAGGGAAGCTTCAGCACAGGAGCGATCCCACGTCTGTTTGATCACGGCATGTAAAACACCTTGCAAGAATCAAATAAAGCTCATAATAATATATGCGTCTGCTGCAGCTGACAATGAGGGACGCACGAAGGGAACGGCAATTTATGAGAGTGAATATTAGATGTATCTCATTAATTTCAACGGCTTTACAGACCCGTCGCAGTGAAGctgttattaaaaatgcattttgctgtAAATCACAACAACCTTTCtcacttaatgaaaaacatttaagatgATTTAATCTCATGTTGTCGACTCCTTCAAGTTCTGCGGCCCTCTGTCGGAATCTCATTACTTCTGATTCTCCGAAGGAAGCGACGGCAGGGGCCCGGTCAGAACCAGCTTGCCTTGCCCTGCTCTCTCAGCTTTCATTTCTTAACCACAATAAGGGCATTAAATCTATATAATTAGAAGTGCAGGCAATCTATCAATGCATATTAATAACGACCTGCTTGGGTTGTCCAGTTCTGGCAGGATTCAGTCGTTAACAGTTACAAAACAGTAAGTCACATTGCAcacaatctgtatttttaaatcctgcCCTGCGATCTCCCCTCGCTCTCATACGAACATGTCCAGATGTAGAACAGTTTAATTCCGAGGATTTATACCCGGCCAGCTTCTGTTATCATCAGCTTCAGCTCTGTGGCGAGAGGCGAGATCACACCCTGTTTCACTTCGGCAACTACATTATTACAAACCACAGCAGCGCTATACAAACTATACAACTCTGTCAAAATGAACTAAGCTTTTCCTATGACTTCAGAATGTATCGATGTGCTGTAGCTACtccaaataaagcatttatcaCTGTGTATCTGA

Function

GO: NA

KEGG:

id description
K19876 STEAP4; metalloreductase STEAP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107909 lncRNA upstream 18913 19852369 ~ 19894619 (+) True G86455
TU107908 lncRNA upstream 75719 19829816 ~ 19837813 (+) True G86454
TU107871 lncRNA upstream 326163 19585989 ~ 19587369 (+) True G86419
TU107824 lncRNA upstream 464425 19448729 ~ 19449107 (+) True G86387
TU107802 lncRNA upstream 518658 19392097 ~ 19394874 (+) True G86367
TU108001 lncRNA downstream 233423 20152245 ~ 20152766 (+) True G86529
TU108008 lncRNA downstream 286370 20205192 ~ 20205538 (+) True G86536
TU108061 lncRNA downstream 379640 20298462 ~ 20298782 (+) True G86573
TU108113 lncRNA downstream 451823 20370645 ~ 20371536 (+) True AMCG00021517
TU108128 lncRNA downstream 489582 20408404 ~ 20409658 (+) True G86625
AMCG00021501 mRNA upstream 291311 19614195 ~ 19622221 (+) True AMCG00021501
AMCG00021496 mRNA upstream 442503 19470241 ~ 19471029 (+) True AMCG00021496
AMCG00021492 mRNA upstream 447955 19460464 ~ 19465577 (+) True AMCG00021492
AMCG00021493 mRNA upstream 466909 19422724 ~ 19446623 (+) True AMCG00021493
AMCG00021491 mRNA upstream 521778 19384029 ~ 19391754 (+) True AMCG00021491
AMCG00021506 mRNA downstream 18917 19937739 ~ 19945655 (+) True AMCG00021506
AMCG00021510 mRNA downstream 53151 19971973 ~ 19975104 (+) True AMCG00021510
AMCG00021507 mRNA downstream 56781 19975603 ~ 19982429 (+) True AMCG00021507
AMCG00021511 mRNA downstream 103700 20022522 ~ 20057785 (+) True AMCG00021511
AMCG00021512 mRNA downstream 193591 20112413 ~ 20114095 (+) True AMCG00021512
TU107857 other upstream 412290 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 630617 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 1663846 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 2909401 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 3199494 16656644 ~ 16714038 (+) False G85787
TU108101 other downstream 423788 20342610 ~ 20401249 (+) False G86601
TU108117 other downstream 459601 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 480104 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 748648 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 1179597 21098419 ~ 21109368 (+) True AMCG00021550

Expression Profile