RNA id: AMCG00021517


Basic Information

Item Value
RNA id AMCG00021517
length 687
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00021517
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20368153 ~ 20371536 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCTGGGGCTGAAGCCGTGCTGCAGCGTCTGCAAAACCAACTCCTCTTCCATGTGGAAGAAGGGCAATCAGGGCGAGATCTTGTGCAACAACTGCAACGGGAAGGGCAGCAACGTTGGCGGCGGGACAGCGGGGACCCCGTCCTCCACCTCCGCAGCACAGCAGAACAATGGCGGCGGGAAGCAGtcGAAACAAGAAATCCACAGGAGGTCGGCGCGCCTGAGAAACACGAAGTATAAAGCCCCTGCATCGGAGAAAAAGGTCTCCACCAAAGGAAAGGGCAGGAGACACATCTTCAAGCTTAAAAACGGCGTGTATTACCAGATCGGTGATGTGATCAGAGTGACCGACGAGGAGGACGGGAAGCCGTACTACGCGCAGATACGAGGCTTCATCCAGGACCAGTACTGTGAGAAGAGCGCTGCCCTCACCTGGCTCATTCCCACGCAGGCCAGCCCCCGGGAACAGTTTGACCCGGCCACGTATATTGTGGGCCCAGAGGAAGACCTGCCGCGGAAGATGGAGTACCTGGAGTTTGTGTGCCACGCCCCCTCGGAGTACTTCAAGTGCAAGAGCTGTCCCTTCCCCACCATCCCCATTCGGCCAGAGAAAGGATACATCTGGACCCACATCGGACCCACGCCGGCCACAGCGGTCAAGGAGTCATTGGGGAGCCTGCTGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108061 lncRNA upstream 69371 20298462 ~ 20298782 (+) True G86573
TU108008 lncRNA upstream 162615 20205192 ~ 20205538 (+) True G86536
TU108001 lncRNA upstream 215387 20152245 ~ 20152766 (+) True G86529
TU107909 lncRNA upstream 473534 19852369 ~ 19894619 (+) True G86455
TU107908 lncRNA upstream 530340 19829816 ~ 19837813 (+) True G86454
TU108128 lncRNA downstream 37388 20408404 ~ 20409658 (+) True G86625
TU108136 lncRNA downstream 91239 20462255 ~ 20462991 (+) True G86633
TU108173 lncRNA downstream 129770 20500786 ~ 20501303 (+) True G86665
TU108178 lncRNA downstream 137492 20508508 ~ 20547410 (+) True G86668
TU108195 lncRNA downstream 241610 20612626 ~ 20614365 (+) True G86685
AMCG00021518 mRNA upstream 28415 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 93770 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021512 mRNA upstream 254058 20112413 ~ 20114095 (+) True AMCG00021512
AMCG00021511 mRNA upstream 310368 20022522 ~ 20057785 (+) True AMCG00021511
AMCG00021507 mRNA upstream 385724 19975603 ~ 19982429 (+) True AMCG00021507
AMCG00021522 mRNA downstream 18741 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021526 mRNA downstream 110195 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021527 mRNA downstream 135009 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021530 mRNA downstream 161152 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021529 mRNA downstream 183477 20554493 ~ 20563626 (+) True AMCG00021529
TU107857 other upstream 866911 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1085238 19279765 ~ 19282915 (+) False AMCG00021485
TU107506 other upstream 2118467 18248490 ~ 18249686 (+) True G86121
TU107177 other upstream 3364022 16997877 ~ 17004131 (+) True G85869
TU107080 other upstream 3654115 16656644 ~ 16714038 (+) False G85787
TU108117 other downstream 7407 20378423 ~ 20380424 (+) True G86616
TU108100 other downstream 27910 20398926 ~ 20401249 (+) True G86601
TU108198 other downstream 296454 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 727403 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 727576 21098592 ~ 21109368 (+) False AMCG00021550

Expression Profile