RNA id: AMCG00021519


Basic Information

Item Value
RNA id AMCG00021519
length 2801
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00021519
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20287321 ~ 20297650 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGCTTTCCGGATCTGAGCCCCCCAGCACCATGGGCCATCAGGACAACCTGGAGGACGTGTTCGTCGCTGTCATTCGCCCAAAAAACACCATCCTCCTGTTAGAAGTTCCTCTGGAAGGcaaggagaagaaaaggaaaaaagttctTCTCGGGACCAAGATACAAGCCGACAGCGACCGGTCCCGGACAATTTTGGAATATGTGGACGAAACGACAAAGCCTATATCTAACAACCAGGGAATCAAAGGCAAGAGAGTCGTGTACATGAAGAAGTTTGCTCTGGAGGGCGAGGATGTGGGGAAGGAGGCATCTCTGTTCATTGTTCCAATCACAGTCAAAGACAACAGCAAACCTGTGTACTGCCCCGGGAGCCCGAGCTTCTACTGCTTCCAGGACATCATGCGCGTGTGCAGCGAGACCAGCGTGCACTTCTCCTCGCTGACCGCCCGCATGCTCATGGCCCTGGACAACGTTGCCATGTTGTCTCTGCTCAGGTGGCTGTTGGAGCAGCACACAGTTCCCCACGCGGTCCCGGCTCTGTTCAGACCCGCCCCCATGGAGAGGGTGAAGACCAGCGTGACCAACCCCGCCTACTCCAACGAGAGCAGCCAATTGGAGGGCACGCTGCACATGGGCTACACTGCCCTGGAGATCAAGAGCAAGATGATGTCACTGGAGAAGGCGGACATGTGTGTCCAGAACCCGCTGTACGGCTCTGACCTGCAGTACACCAACCGGGTGGACAAGGTGGTCATTAACCCCTACTTCGGCCTGGGAGCTCCAGACTACTCCAAAATCCAGATCCCCAAGAGGGAGAAGTGGCAGCACAGCATGAGCAGCGTGACCGAGGACAAGGAGCGCCAGTGGGTGGACGACTTCCCGCTGCACCGCAGTGCCTGCGAGGGCGACACCGCGCTGCTCACCAAGCTCCTGGACAGCGGCTTCTCCGTCAACCAGCTGGACAGCGACCACTGGGCCCCCATACACTACGCCTGCTGGTATGGGAAGGCCGAGGCCACGCAGCTGTTGCTGGAGAAGGGGAAGTGCAACCCCAATCTCCTGAACGGCCAGCTCAGCTCCCCCCTGCACTTCGCGGCCGGAGGGGGGCACTCGGAAATAGTGCAGCTCCTACTGCAGCACCCCGAGACGGACCGGCACATCGTGGACCAGCAGGGGAGGTCGCCGCTGCAGGTGTGTGAGGAGAACAAGCAGAACGACTGGGAGGAAACGGCCAAGCTCCTCCAGCAGGCCGCCAGCAAACCATACGAGAAAGTGAGGATTTACCGCATGGACGGCTCATACCGCTCCGTGGAGCTGAAACACGGGAACAACACGTCTGTGCAGCAGATCCTGGAGGGCATGCGTCTGTCCCAGGAGACGCAGCAGTACTTCACAATCTGGATCTGCTCGGAGAACCTCAGTCTGCAGCTGAAACCCTACCACAAGCCCCTCCAGCACCTGCGGGTGTGGCCTGACATCGTGACCGAGCTGACCGTACTGGACCCCCAGAGGGAGACCCCGCAGCTCTTCCTACGCAGAGACGTGCGGCTGTCGCTGGACATCGAGAAGAAGGTGGAAGACCCCCTGTCCATCCTCATCCTGTTCGACGAGGCGCGGCACTGCTTGCTAAAGGGTTTTTTCCCGTCGCCCGACAGCAAACTGATCACCCTGGCCAGCCTGCTCCTGCACATCATCTACGGGAACTACGAGAGCAAGAAGCACAAGCAAGGCTTCCTCACCGAGGAGAATCTGAAATCTGTCGTCCCCATATCAAAGATCAAGAGCAAAGCACATCACTGGACCAACAGGATACTTCACGAATACAAGACCCTCAGCACCAGCGAGGGCGTCAGCAAGGAGATGCACCACCTGCAGCGGCTGTTCCTGCAGAACTGCTGGGACATCCCCACCTACGGGGCGGCCTTCTTCACCGGCCAGGTGTTCACCAAGGCCAGCTCCAGCAACCACAAGGTCATCCGCGTCTACGTGGGCATCAACACCAAGGGGCTGCATCTCATGAACATGGAGACCAAGGCCCTGCTCATCAGCCTCAAGTACGGCTCCTTCATGTGGCAGCTGGGAGAGGCCGATCAGTACTTCCAGATCCACAGCCTGGAGAACAAAATGAACTTCATTGTTCACACCAAACAGGCCGGCCTCATTGTCAAACTCCTCATGAAGTTAAGTGGACAGATGACGCCCAACGACAGAAGTTTATCAGACAAGTATGGCTACGGATAACTCAAATACTCCACACGCTCTTCTGAACACTGCTTTGTCCTGTATATTATTTTGCTGTGATGGAATATTATCTGATTGCCTGTTGCGAGACGCGCCGTCCTTCTGTGATGTGAACGCTCCCGTCGGAGAAGACAACATCAAAGAGACTCATGAGGACACGAGACTAGACAAGGGCACCAGACAAGGGATTTTCACAGGAGTCTGATGAAGCAAAACGCTCCAATACCCTATGGACAGTGGACTTCTGGATTTAGTTTCACATCCAGTACGCACGGCTGAGTCACTGCAGGTCGTGTCCCCTGTGTGAATGTCTTGCTTCGGTATTAATAACTTCAGCAACTCTCGTTTCCATTTCCCCAGTTAACAGCTGATGGTTGGACTGATTttgtaaatatctgtatttaagtgtggtttttttttttatgttttgttgtttttgaataaaataatatactgtagtgccTTGACACATTGTTTACTGTCCTGCGGCATGGgatgaataaaacattcactCCAGTGTGGGAGATCTGTTACGTCTCATGGGGGAAACAATCGAG

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0007033 vacuole organization biological_process
GO:0045602 negative regulation of endothelial cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0001886 endothelial cell morphogenesis biological_process
GO:0003007 heart morphogenesis biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0005874 microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17705 KRIT1; Krev interaction trapped protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108082 lncRNA downstream 5725 20281152 ~ 20281596 (-) False AMCG00021514
TU108002 lncRNA downstream 134554 20152220 ~ 20152767 (-) True G86530
TU107936 lncRNA downstream 368518 19912537 ~ 19918803 (-) True G86477
TU107929 lncRNA downstream 374918 19903996 ~ 19912403 (-) True G86472
TU107933 lncRNA downstream 386485 19900458 ~ 19900836 (-) True G86474
TU108095 lncRNA upstream 28043 20325693 ~ 20339742 (-) True G86598
TU108144 lncRNA upstream 57420 20355070 ~ 20356479 (-) True G86639
TU108154 lncRNA upstream 95394 20393044 ~ 20394206 (-) True G86648
TU108199 lncRNA upstream 315013 20612663 ~ 20614108 (-) True G86689
TU108253 lncRNA upstream 523982 20821632 ~ 20822603 (-) True G86736
AMCG00021514 mRNA downstream 2342 20281545 ~ 20284979 (-) True AMCG00021514
AMCG00021515 mRNA downstream 7946 20275058 ~ 20279375 (-) True AMCG00021515
AMCG00021516 mRNA downstream 79845 20206322 ~ 20207476 (-) True AMCG00021516
AMCG00021509 mRNA downstream 325224 19951017 ~ 19962097 (-) True AMCG00021509
AMCG00021508 mRNA downstream 377648 19905943 ~ 19909673 (-) True AMCG00021508
AMCG00021521 mRNA upstream 74150 20371800 ~ 20376570 (-) True AMCG00021521
AMCG00021520 mRNA upstream 80773 20378423 ~ 20389444 (-) True AMCG00021520
AMCG00021524 mRNA upstream 105133 20402783 ~ 20412472 (-) True AMCG00021524
AMCG00021523 mRNA upstream 116880 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021525 mRNA upstream 146893 20444543 ~ 20460278 (-) True AMCG00021525
TU107835 other downstream 818588 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1009298 19275354 ~ 19278023 (-) True G86327
TU107753 other downstream 1019860 19260945 ~ 19267461 (-) False AMCG00021483
TU107653 other downstream 1377413 18821533 ~ 18909908 (-) True G86241
TU107532 other downstream 2038427 18247661 ~ 18248894 (-) True AMCG00021460
TU108097 other upstream 31772 20329422 ~ 20335304 (-) True G86600
TU108146 other upstream 60651 20358301 ~ 20360255 (-) True G86640
TU108155 other upstream 97962 20395612 ~ 20397783 (-) True G86649
TU108218 other upstream 424234 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 766208 21063858 ~ 21083570 (-) True G86808

Expression Profile