RNA id: AMCG00021524


Basic Information

Item Value
RNA id AMCG00021524
length 3590
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00021524
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20402783 ~ 20412472 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGCCACCATTAAACAGCGGTAACGGTGTCGGTTTATAAACCAAATCAGTCGGCGAAGTTATGTGAAGATAAACCCGTTTTAATTCAAACACCTCCGAGGAAATCCTCCAGAATGGGGAAGAGAGACAACAGGGTGGCCTATATAAACCCCATCGCTGTGGCTCGGTCTCGGGGACCAGCTCCGTCGTCGGGCCCTTCGATTCAGGACTACCTGAACAGACCTCGGCCCACATGGGAAGAGGTGAAAGAACAgctggagaagaagaagaaaggctCCCGGACGCTAGCTGAATTTGAAGAGAAAATGAATGAGAAATGGAAGAAGGAGCTGGAGAAACACAGGGAGAAGGTCCTCGGAGGGTCTGACAGTGCTTCCAAAAAGAAAGAGaaaaaacggaaagagaagaagaaatcCAACAGGCAttcttcatcttcctcctcttcatcaAGTTCTGATTCTTCTAGCAGCTCCTCTGAGTCTGAGGATGAGgaagaaaagaaaaccataaaGAAGAAACGGAAGCGAAAGCACACCAGGAGGTCGTCTGAGGACTGCGAGTCCGACTCCGACTCCGACAGCAAGGAATcctccaaaaagaaaaagaagaaatccAGAGAAGatgcagagaaagaaaagGACGATCGATGCGGCggcaggaggaggaagaagacgGACCGCGGCCACAGAGCGTCGTCCTCGGAGTCGTCTGCTGGCGCCGGCGTGGCCGAGGACGCGGagttgaagaagaagaagaggagtaGTGAGGAGAAAGAGAAGGTCTCAGACAAAtccaagaaaaagaagaagaagaagcacaaGAAACACGGCAGGAAAAAGCGGCCGGCGTCGGGGTCTGGCTCGGACTTGGACTAAGCGCCGGGTGCGGACCTCGACCGGCGATGAGAGGATCGTGTGCTACTCTGCTACCAACCGACCAAAAATACAGACGACCGCATGACTTCCCAGGAGGTGTTCACAGGATTTCTCAACCGTTCGCTTTCTGGGGAGCTCCGCTGTCACGGCGGGTCTAAACCGGTGAAGTTTTGGCTTTTTCCTGGCGATGTAATGGAATGTAcaagatttttatttatctttctcgCCCCCCCCAAGCTCCCCCGACACAACCACTGCGACCAACGGAAGCATGAGGATCTGTGGTTGCCTTGGAggtgtttataaaaataataaaaacaaagagcagCTAATTTTTAATCGAAGTGTGCCGTTCCACTTCGCTCTCCTACCGCCCCCTTCACTGGTGTCGGTCTGGTGCTGAGGGGCGCGAGCGGACGGGCAATTCGCTGGAGGCTGGTTTTAAAACGCAATAAAGTTCATTACCTCTGTTGACAGTGACAACTCGGCCTCTTCACACCGATGCGAGGGGACGGGGGGGGGCTGCTAGGGCGTCGCTGGTCTGCGGTGTTTGGTGATTTATTCCAGCTGAGGTGAGAAGTGAGGGCCGGGCCGGGCAGccgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcagcTTCATATTGAAGTTGTTacgaaaagaaaaaatgtgctTGGTTCCGGGGGACGGACGCTTTCATGGGTTGTGTGTCGGCTGTCCAACTGGACAATCTGTCTTCTGTCCGTTATCGTCACTCTCATGTGTACGTGTGGTTGTTTGATTGGCTTTGAAAACTGGGATTATATACTTTATGtagatttgttttgaataaaggCAGCAACTTTATACCGGATCGGCACTGCTTCGACAGTGTGTCCATGTCTCCACCCGTCTTCGTTGGATGTGTCCAgcctgtatgtatttattattttgcaaaatcaaaacagtTTCTAGCTGTTAAAGTAAGAATTTGCTCGGCAAACCAAAATCTTCAGTCGATCGTCATTACCTTTTAATGGGCCTGTGCACTGGGCCGCCCGCACGCACGACAAGTGTGTAGAGCCAGTTCTGTCTTACACTTCTGTTCAGATGTTTTTTCAAAGGACAAGTTCTGTGCTCACCTGTGGAAACACCCGTGACTGTGTGAAGActgtgaaaaatacttttttgtgaaGCTGCCAGTCTCTATGAACGGGTCACTGCAGTCATAAGGAGACGAAGCTCGCATGCAGACCTGTCTGAAATCTCTatagttgattttattttttccagtggtattaaatacacaatgtttaaaatgacctggcttcttttagttttttttattccccctctTGTTGCAAATGCAATTAAAGAAAAGATCAGATGGGTGAGGATGTGTGTTTTATGTCCTACTTGTCAAAGAGACGCTCTGCAGTCCTGTGGTGAGCAGCGGGGGGCTGGTGGGAAAGTGAAATTGCTTGAGATGCGCAGCACGGGCTGCGAGGCAGGAAGTGCATGTACAGTTTAACTCTTGCGTTGGGCTCTCGGCTGCAGCTGTGTTGTCTTCAAACCCCAGCTGAGCACCCGTGTTTGGAGCCAGTTGCACAAgttctgaaaatgaaagcatGCTTTTCATGTCCCAGAAGATATTGAAGGATCGCTTGGTTGAGTCAGAAAGTCTGGCTCTGTTTTACAAACCGTTCTCACtcattaaatgcatgtttagGCAGAGGGCCTCCAAACACTgccctgaaaataaaagcatcgCATTGTAGTGCGGTCTTCTAACTCATGAATGTTTCTTTATTGCGGCTGAACTGACCAGTAAATGTGTGGCACGTTGGTCACAGGgaatcgtgtgtgtgtgagagagtcaTCTGATGGGTTCCCTGGGTGGTTGTGTGCCGACCCTTCTAACACGTTGCGGATTGGACCTGGTGAAAGTGCTGGAAATCCTGTGGAAAAGCAGGGCAAAGCCATGTGCTTGTTTGGGACGGGTACAAGCCAAAATAAGTCTTTCATGAGGGTACAATTGGTCTAATCTGTCTGATTTAGCTAATTGCTTAGCAGGCCTGTTATTTTGTGAAGAAATGGGTAAGCCTGCCTTTCCTAATTTAATTTGCCAACCTCCTTGCTTCATGCAATCCAGTGAGAGGATGTTTTGCAAACCAGTGCAGCACCGAGGTTCGTCCTGTTTAATGTGATGTGGAAATGTCCGTTGTTTAGCTGGGTCGTGTTTGTATGGATGAGAAGGTTTTTAAGGACAGCTGTCATTACTCGTGTATGTCAAGACATGTATGTTTCATATGACATCGGTTTTGAGGtacagaatgaatgaatgcaccTGCTTTGTACAGATTCATCAAAATCGATTAGGCAATAAAATAAGATTCATAGTGTCATTGTTGCAcgtgttttaatatatttaataaaatcccATCCGGGCCACCATTTTCATGATTTAAGTGATTTTGCAAAAGCAGCAGTATTGTGCTGTCATGTGTGAGCTTTTTTTTCAGTCATGCGTTTATTTCTCACTCCCTAAAACATAgtttcatttttcaataaataaaaaacgcATGTGCCTGTGTCTTGTGTCTGTTGGGGAAGTGAAACTCCTACCAGATCAATCCCTGTTGCTGGAAACTGGAGGAGAAAGCAGCCCAGAAACTGGAGCAGAAAGCAGCCCAGCAACTGAAGCTGCTGCAGAGGGATGGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108154 lncRNA downstream 8577 20393044 ~ 20394206 (-) True G86648
TU108144 lncRNA downstream 46304 20355070 ~ 20356479 (-) True G86639
TU108095 lncRNA downstream 63041 20325693 ~ 20339742 (-) True G86598
TU108082 lncRNA downstream 121187 20281152 ~ 20281596 (-) False AMCG00021514
TU108002 lncRNA downstream 250016 20152220 ~ 20152767 (-) True G86530
TU108199 lncRNA upstream 200191 20612663 ~ 20614108 (-) True G86689
TU108253 lncRNA upstream 409160 20821632 ~ 20822603 (-) True G86736
TU108256 lncRNA upstream 410528 20823000 ~ 20823964 (-) True G86738
TU108257 lncRNA upstream 411550 20824022 ~ 20827297 (-) True G86739
TU108259 lncRNA upstream 413158 20825630 ~ 20854294 (-) False G86739
AMCG00021520 mRNA downstream 13339 20378423 ~ 20389444 (-) True AMCG00021520
AMCG00021521 mRNA downstream 26213 20371800 ~ 20376570 (-) True AMCG00021521
AMCG00021519 mRNA downstream 105133 20287321 ~ 20297650 (-) True AMCG00021519
AMCG00021514 mRNA downstream 117804 20281545 ~ 20284979 (-) True AMCG00021514
AMCG00021515 mRNA downstream 123408 20275058 ~ 20279375 (-) True AMCG00021515
AMCG00021523 mRNA upstream 2058 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021525 mRNA upstream 32071 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021531 mRNA upstream 205598 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021533 mRNA upstream 276875 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021534 mRNA upstream 309898 20722370 ~ 20724822 (-) False AMCG00021534
TU108155 other downstream 5000 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 42528 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 67479 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 934050 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1124760 19275354 ~ 19278023 (-) True G86327
TU108218 other upstream 309412 20721884 ~ 20724880 (-) True AMCG00021534
TU108350 other upstream 651386 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2742715 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2925779 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4991178 25403650 ~ 25406538 (-) True G87674

Expression Profile