RNA id: AMCG00021526


Basic Information

Item Value
RNA id AMCG00021526
length 1329
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00021526
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20481211 ~ 20493174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGATGGAGTGTGGAGCCGGAGGCCTGGCGGTCGGTGCCCGTGGAGGGTGGGCGGCCCGGCACTCTGCCAGGCCCCGATGTGGTGCTAGTCATAGCCCCCACACACATCCATGGCACTAAAGGACAGCCTCTTCTTCTGCCAGTGGAGTACAACTTCGCCATCAAGGACGTGGACATCCAGGGCAGCTGGCATCTGAAGAATAAATCCAACGGTCTGACACACCTTGTGACGTTCAGAAACAAGACCGTCATCGCGGACATGCACATGGAATACACCAACAAGTTCTCCTTCCACCCCCCCAATGCGTCCCTGAAGATCAACAGGCTGGACGACACGGAAGAGGGGGAGTACGAGCTGACGATCAACATCAGGTTCTCAAACGACGCCCAACCGGTGAAGAAGACGAAaagcatcaaagtgacagttgaCGTGCCAGTGTCCAGACCGCTCATACGGTTGACTCCGGCCACTGCAGCGATCGAAGACAAAGACAACGTGACATTGAGCTGCTGGGTGCAAAATGGGACGAGGGTGCAGTACCGGTGGCTGAGAGAAACCAATCCCCTCCAGCCCGGCGCTCGCCACACGCTTTCAGATGGTCACAGCGTCCTGCGCATCAGTCCGGTGAGGAAGGCAGACATGGGGAACTACACCTGCGAGGCCAGCAATTACATCAGCCGCCAACAGAGCCAGAAACTCCCACTCAACGTCTTCTATGGACCCTACAACCTGGCCGTGAACTCGGACATTGGCCTGCAGACGGGCCAGGTCTTCACAGTGGATCCCGGGGAGCTGGTGTCATTTGACTGCTGGGCCGACTCCAACCCGCCCAACACCTACGTGTGGATTTCCAAAGGGATCAATTTCACAGAGGTGATCATGACGGGGCCTCGGTTTGAGGTGAAGTCGCTGACCCTCGCGCACCGGGAGGACTACACGTGCCGCGCGTACAACAACGTCACGCAGAAGCAAGACGAGGCCCAGTTCACCATCGTGGTCGCGGGCCTAGGAATCGGCAGGGAAAAACACTCCCAAGTTGGCAGTTCCATATCCCCGGTGGCGGCCATCACTGTGACTTCGCTCATCGTCATCACGTGCATGGTGTTTGTGCTCTTCAGAAAGGCTTGCCATCCTCAGAAAGGTCATGAAGATGCAACTGAAGATTTTGGCATCTACGAATTTATTGCCATTCCAGGGAAATCTGACCCCACGCAGGCTTCAAGCAGGTCTCTCTCGCGGCTGGATTCAGCCCAGGATTTACACACCACCATCTACGACGTCATCAGACACATTCCCGAAACACCTCCACAGGGACCTCTGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108136 lncRNA upstream 18220 20462255 ~ 20462991 (+) True G86633
TU108128 lncRNA upstream 71553 20408404 ~ 20409658 (+) True G86625
TU108113 lncRNA upstream 109675 20370645 ~ 20371536 (+) True AMCG00021517
TU108061 lncRNA upstream 182429 20298462 ~ 20298782 (+) True G86573
TU108008 lncRNA upstream 275673 20205192 ~ 20205538 (+) True G86536
TU108173 lncRNA downstream 7612 20500786 ~ 20501303 (+) True G86665
TU108178 lncRNA downstream 15334 20508508 ~ 20547410 (+) True G86668
TU108195 lncRNA downstream 119452 20612626 ~ 20614365 (+) True G86685
TU108197 lncRNA downstream 127332 20620506 ~ 20620721 (+) True G86687
TU108205 lncRNA downstream 206040 20699214 ~ 20702457 (+) True G86695
AMCG00021522 mRNA upstream 87950 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021517 mRNA upstream 110195 20368153 ~ 20371016 (+) False AMCG00021517
AMCG00021518 mRNA upstream 141473 20314180 ~ 20339738 (+) True AMCG00021518
AMCG00021513 mRNA upstream 206828 20214149 ~ 20274383 (+) True AMCG00021513
AMCG00021512 mRNA upstream 367116 20112413 ~ 20114095 (+) True AMCG00021512
AMCG00021527 mRNA downstream 12851 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021530 mRNA downstream 38994 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021529 mRNA downstream 61319 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021528 mRNA downstream 84519 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021532 mRNA downstream 209930 20703104 ~ 20721264 (+) True AMCG00021532
TU108101 other upstream 79962 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 79962 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 100787 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 979969 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1198296 19279765 ~ 19282915 (+) False AMCG00021485
TU108198 other downstream 174296 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 605245 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 605418 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 665450 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 736678 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile