RNA id: AMCG00021528


Basic Information

Item Value
RNA id AMCG00021528
length 693
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00021528
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20577693 ~ 20589296 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGACTCAGCCACAGAGAGTGCGGGCAGCCATGGTGCCCCGGAGGAACGGAAAGAGAAAGTGCCCAGTCCTCACCTCAGCCAGCTGGTCATCCTGACAGGCAGTGGGACGCTATATGGACTTGCGGAAAGGGTGGTGGCAACAGAATCCCTGGTTTTCCTGGCCGAGCAGTTTGAGTTTCTTCAGCCTCATCTCGACACCATGATGCCGTCGGCCAAGAAGCCCTTCCTGCAGCAGTTCTACTCACAGACCGTGTCGATGGCCAGCGAGCTGCGGAAACCGATCTACTGGATCGTGGCGGCCAAAGCCATCGACTATGAACAGATGTTGATGCTCATGGCTGGTGTTAAGTGGGACATAAAGGAAATCATGTCTCAACATAACATCTACGTGGACGTCCTGTTGAAGGAGTTCGAGCAGTTCAACAAGAGGCTGGGTGACGTGTCCAGGCACGTCCGCATCCCCCTGGCCGTGTCCAACGTCCTATGGGAGCATTGCATCCGCCTGGCCAACCGGACGCTGGAATACTCCATGAAGCAGCTGACGAACCTGGTGAACGTGTGCCTGGGATCGCACATCAACAAGAAAGCGAGACAGAAACTGCTGGCGGCGATCGACGACATCGACAGACCGAAGAGAGATAACATTCTCAAAGATGGTGACAACGTATTGCATGGTTTAACCTCGTAG

Function

GO: NA

KEGG:

id description
K23288 VPS50; syndetin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108178 lncRNA upstream 30283 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 76390 20500786 ~ 20501303 (+) True G86665
TU108136 lncRNA upstream 114702 20462255 ~ 20462991 (+) True G86633
TU108128 lncRNA upstream 168035 20408404 ~ 20409658 (+) True G86625
TU108113 lncRNA upstream 206157 20370645 ~ 20371536 (+) True AMCG00021517
TU108195 lncRNA downstream 23330 20612626 ~ 20614365 (+) True G86685
TU108197 lncRNA downstream 31210 20620506 ~ 20620721 (+) True G86687
TU108205 lncRNA downstream 109918 20699214 ~ 20702457 (+) True G86695
TU108243 lncRNA downstream 311731 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 319521 20908817 ~ 20911992 (+) False AMCG00021539
AMCG00021529 mRNA upstream 14067 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 26763 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021527 mRNA upstream 53367 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021526 mRNA upstream 84519 20481211 ~ 20493174 (+) True AMCG00021526
AMCG00021522 mRNA upstream 184432 20389757 ~ 20393261 (+) True AMCG00021522
AMCG00021532 mRNA downstream 113808 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021535 mRNA downstream 145418 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021537 mRNA downstream 208402 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021536 mRNA downstream 240557 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 285827 20875123 ~ 20886781 (+) True AMCG00021541
TU108101 other upstream 176444 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 176444 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 197269 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1076451 19499800 ~ 19501242 (+) True G86407
TU107757 other upstream 1294778 19279765 ~ 19282915 (+) False AMCG00021485
TU108198 other downstream 78174 20667470 ~ 20667927 (+) True G86688
TU108360 other downstream 509123 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 509296 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 569328 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 640556 21229852 ~ 21231488 (+) True AMCG00021561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028298 True 2100 mRNA 0.41 6 NC_007130.7 40641338 ~ 40686675 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02709494_02814598.mRNA True 3904 mRNA 0.47 32 CI01000054 2709489 ~ 2814900 (-)