RNA id: AMCG00021534


Basic Information

Item Value
RNA id AMCG00021534
length 608
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00021534
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20721884 ~ 20724880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCGAGCGTAGGTCCAAATACACGTTAGCTTAGCAGAAAGAAGCGCTTTGAGCAATTACCGTTTTCAGGAGGATAGTTAAAATTAGCAACAAACCCGGATTTGACAGCTTCCCCTTCAAACTGTGACGACTGTAGAGACATCACAATGAGACGCGCAGGTTTGGGTGAAGGAGCGCCCACAGGGAATTACGTTGCCAGTGGATACAGTGTCTATGAAGAGGAAAATGAACAATTGTCAGAAGGTTTGAGAGACAAAGTCAAAGCTTTAAAACATGTACTGTATGGCATGTTTGAGCTACTGCTGTACCTAACTGAGTCTATTCTTTCACAGCTCTCTATCGATATTGGAGCAGAGGTAAAGCACCAAAATAACATGATCACAGAAATGATTCCTCCACATGATGTTGGAGTGTCTCAAGCGGACAAACCATGGCTCTCCATCCTCCCACAGGACAGTGCCTTCGACTCGACGGGGGGGCTGCTGGGGGCCACTATGGGTCGGTTGAAGGTCCTATCTCGGGGAAGCCAAGCCCGGCTCTTCTGCTACCTGCTGCTGTTCGCCCTCTTCGTCTTCTTCGTCCTGTACTGGGTGATCAGACTGAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108199 lncRNA downstream 108262 20612663 ~ 20614108 (-) True G86689
TU108154 lncRNA downstream 328164 20393044 ~ 20394206 (-) True G86648
TU108144 lncRNA downstream 365891 20355070 ~ 20356479 (-) True G86639
TU108095 lncRNA downstream 382628 20325693 ~ 20339742 (-) True G86598
TU108082 lncRNA downstream 440774 20281152 ~ 20281596 (-) False AMCG00021514
TU108253 lncRNA upstream 96810 20821632 ~ 20822603 (-) True G86736
TU108256 lncRNA upstream 98178 20823000 ~ 20823964 (-) True G86738
TU108257 lncRNA upstream 99200 20824022 ~ 20827297 (-) True G86739
TU108259 lncRNA upstream 100808 20825630 ~ 20854294 (-) False G86739
TU108260 lncRNA upstream 103437 20828259 ~ 20830922 (-) True G86740
AMCG00021533 mRNA downstream 29146 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 83414 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 262092 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 287319 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021524 mRNA downstream 309898 20402783 ~ 20412472 (-) True AMCG00021524
AMCG00021538 mRNA upstream 118841 20843663 ~ 20855774 (-) True AMCG00021538
AMCG00021545 mRNA upstream 174249 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 191861 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 258778 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 310041 21034863 ~ 21038425 (-) True AMCG00021548
TU108155 other downstream 324587 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 362115 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 387066 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1253637 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1444347 19275354 ~ 19278023 (-) True G86327
TU108350 other upstream 339036 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2430365 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2613429 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4678828 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5180622 25905444 ~ 25908005 (-) True G87806

Expression Profile