RNA id: TU108218


Basic Information

Item Value
RNA id TU108218
length 997
RNA type TUCP
GC content 0.45
exon number 5
gene id AMCG00021534
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20721884 ~ 20724880 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCATTACCCAGCGGCCACGTCGTCTGCCGTATTCCGATGTGTTTGCTGTCGTGGCGTTTCGAGCGTAGGTCCAAATACACGTTAGCTTAGCAGAAAGAAGCGCTTTGAGCAATTACCGTTTTCAGGAGGATAGTTAAAATTAGCAACAAACCCGGATTTGACAGCTTCCCCTTCAAACTGTGACGACTGTAGAGACATCACAATGAGACGCGCAGGTTTGGGTGAAGGAGCGCCCACAGGGAATTACGTTGCCAGTGGATACAGTGTCTATGAAGAGGAAAATGAACAATTGTCAGAAGGTTTGAGAGACAAAGTCAAAGCTTTAAAACATCTCTCTATCGATATTGGAGCAGAGGTAAAGCACCAAAATAACATGATCACAGAAATGGACAGTGCCTTCGACTCGACGGGGGGGCTGCTGGGGGCCACTATGGGTCGGTTGAAGGTCCTATCTCGGGGAAGCCAAGCCCGGCTCTTCTGCTACCTGCTGCTGTTCGCCCTCTTCGTCTTCTTCGTCCTGTACTGGGTGATCAGACTGAGGTGATGAAGAACAGCGCGGCCTGCGCTTTGTGCCACGGCTCTGGACTGAACACAGACGCCGGATGTTGGAATGGAAATGAATCCTGTGAGCAGCAACGATGCCTCTGTAGATCTGTAACTGGGATGcagttcatacattttttttttttttactgaagtcAGCCAAGGATGTTTCTGTGTAACTCAATGCTTCTGAGTAAGATTGCACATTGTTTGTATGAAATGTAAGTGACAATTTACTTGCATCTGTATAGAATATGTAATCCTTTGATTTCAATATGTGTAAAACTGTGGACCACTCTCTCTGACAGACAAACATCTCTCGACAGTAAAACTGAGCCCTAAGGAGATGgaatataaatacaacttaAAGATGTGCCTAAAGGAATAAATGATCCGTTTAGTTCGATTGGgaactgttttttcttcttcttttcttattATCCTAACACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108199 lncRNA downstream 107776 20612663 ~ 20614108 (-) True G86689
TU108154 lncRNA downstream 327678 20393044 ~ 20394206 (-) True G86648
TU108144 lncRNA downstream 365405 20355070 ~ 20356479 (-) True G86639
TU108095 lncRNA downstream 382142 20325693 ~ 20339742 (-) True G86598
TU108082 lncRNA downstream 440288 20281152 ~ 20281596 (-) False AMCG00021514
TU108253 lncRNA upstream 96752 20821632 ~ 20822603 (-) True G86736
TU108256 lncRNA upstream 98120 20823000 ~ 20823964 (-) True G86738
TU108257 lncRNA upstream 99142 20824022 ~ 20827297 (-) True G86739
TU108259 lncRNA upstream 100750 20825630 ~ 20854294 (-) False G86739
TU108260 lncRNA upstream 103379 20828259 ~ 20830922 (-) True G86740
AMCG00021533 mRNA downstream 28660 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 82928 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 261606 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 286833 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021524 mRNA downstream 309412 20402783 ~ 20412472 (-) True AMCG00021524
AMCG00021538 mRNA upstream 118783 20843663 ~ 20855774 (-) True AMCG00021538
AMCG00021545 mRNA upstream 174191 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 191803 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 258720 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 309983 21034863 ~ 21038425 (-) True AMCG00021548
TU108155 other downstream 324101 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 361629 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 386580 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1253151 19466060 ~ 19468733 (-) False AMCG00021495
TU107755 other downstream 1443861 19275354 ~ 19278023 (-) True G86327
TU108350 other upstream 338978 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2430307 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2613371 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4678770 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5180564 25905444 ~ 25908005 (-) True G87806

Expression Profile