RNA id: AMCG00021535


Basic Information

Item Value
RNA id AMCG00021535
length 1710
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00021535
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20734714 ~ 20782173 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTACGCAGTGGTGCGAGACTGTCTTCTGGCCAGGGCAGGACTGGGGAGAACTTGGTTTGGACAATTGGTCTCCGgttccacattttgcatttcatccGCAGCTCTCCGTGACAATTCCAGGAATAATTCAGCGGATTTGCACGCATTGCTTCTGACAGTCTCTGAATCGAGGGACAAGCTGAATGTGTCTGCGCAGTTCGTTCCAGAGAGGGAGGAGCCACTGCGATGTCTTGGGTGGGGCTTGTTGAGCTGCAGACCTGGGGTTGATCTGAGGAGGTTAAAAGGGTCAGAGCTGAAGCATTCTTACAAACAGACACtcgcaaaaaaaaaaaagaaagaaagaaagacccTGTGGAGCCTCGCCTCTTTGTCCCCTGTGTTGACAAACATGCTGCGTTTCTGCTCCGTCAGCACAGGCAGAGGACCGAGCACCAGGCACCGCCTTCAGGCCGTCGAATTCCTCCCCATCCCTGCATCTCACTGGGCTGACGTATTCACTGAAAAAGTCCAGAGACGGGCGTTCAGGACGTGGAGTTGGGGGATGGGGGGCCTAACATATGCCATTGATTGGAACGAGAAGGACAAGCTAGGGGTTGATGAGACAGAGATGCCCCACAGAGCGCAGGGTTCGGTCAAACgccTTCAGTGGAGTCTGAATCCCGTCCAGAACTACCAATTTAAGAGAAATTATGTGTTAAGAACCGTGGGTCTGTGGAAGAACGTGGAAGGTACTTGTGATGTCATGTCCTCCGGTCACAGAACTGACATTGATGTTCCACAGCAGATTCATGTCCGCTCTGTACAGAACTGTGTGGCACCACGGCAGGGCTGGGACACCGAGAGACGCACGCGGGACGGAGCAAGGGAATGGCAGAGTGGAAACAGCAGGGTGGAGCATCAAAATCAGTTCTGGGCTGCAGGTGGGTCAGTCCGGACCGGTGTGTTGAATCACACTCAGAGAGAGGCAGTGGAAACAGTAACTCGAGCTGCTCCTCAGCCCGTCCTCAGCGTGCCTCGGCTCGCCCGCACAGACAACTCTCCTCCTCGCTGCATTCTCCtggcaggaaaaaaaagtcCCTTGAATTATTGTCTTGTTCCTGAGTGGGCTAGGGAGCTCAGCTTGGGCGATCTCTGCCTGGCCGCACCACATGATGCCTTGGTGGAGTCCCTGTGGTTTGAGAAACAGCATCAATTACAGCTGTTCACCATCCGCAGgAGCTGCAGAAACAGCTCCATCttaaaggggggggggaggacTAGAAGAAGCTGGAAAAAGTCAGTCATAGAAATCTCCCCCCCACTGGAATGTGTGACGTCACGAGCCAGACCTGTGAGCTCAGCAGAGGGGCGAAGACTGTGCTTCAGAGAATTGGCTCATGCGTTGACACATGTAAAGGGTGGCCTGGATTTTAATTCACACAGATACCCTTCGCAGTTAAGGATTCGGAGCACTCCTTACCAGTCACAGTACGGTACACACCCCTTTGTGTCCGGGGCGAAGAGGTGCCCGGACACTGATTTGCTGTTTGGTTTCGCCCTCGTTGCTCTCCGTGACATCTGTGTGGCCCCACCCACCGCACTGTTTACATCCCAGCACAAACACCCCCAACTGGCCCCCAGCGTCTGTGGAGCTGTGACCCTCAGAGGAGAGGAGGCTCTGTCTGCCAGCCTGCTGGACTTACATGAAGGGTTTACTTTACTCTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108205 lncRNA upstream 32257 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 113993 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 120349 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 187304 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 233411 20500786 ~ 20501303 (+) True G86665
TU108243 lncRNA downstream 118854 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 126644 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 252929 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 389917 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 454928 21237101 ~ 21238163 (+) True G86859
AMCG00021532 mRNA upstream 13450 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021528 mRNA upstream 145418 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 171088 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 183784 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021527 mRNA upstream 210388 20506025 ~ 20524326 (+) True AMCG00021527
AMCG00021537 mRNA downstream 15525 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021536 mRNA downstream 47680 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 92950 20875123 ~ 20886781 (+) True AMCG00021541
AMCG00021540 mRNA downstream 108717 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021542 mRNA downstream 122215 20904388 ~ 20907786 (+) True AMCG00021542
TU108198 other upstream 66787 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 333465 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 333465 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 354290 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1233472 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 316246 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 316419 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 376451 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 447679 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 447679 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile