RNA id: AMCG00021536


Basic Information

Item Value
RNA id AMCG00021536
length 4772
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00021536
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20829853 ~ 20842424 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGACGCCCGCCGCCCCGCCACTCCGCCGGGTGAGGAAGCCGCGGCGCTAGAGGGGCAGAGCGGGCAGAGCGGGCAGAGCGGGCAGCCCGCCCCGGAGCCGCCGGCAGGGGGACGCCTGAGCCCCGACGTGCGCTCCTGGTTCAGCCCCTTCGCTGCGTCCCGTCTGTCTGCGTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAGCCTGGGCAAACGGGaaataaatcagtatttcaCCATCAAGAACGCCAAGCTGCTCTCCCTCGCCGCCGTCTTCCTGCTCACCGTGTTGCACTCGCTCTCTCGGCACTATGGAGGGGGGGACACGTGCGAATGGCTCCTGTCCAGCGGGAAGTTCCTGGGAGAGGGTGTGTGGCAGCCCTATGGTTGTATGATGCACAGATATAAAAGCACgGAAGCAAAGGATTGTCTCCACCAGAAAAGAGTCGCGTTCGTAGGGGACTCCCGCATCCGCCAGCTCTTCTACTCTTATGTGAAACTCATAAATGCAGATGTGAAAGAGGAAGGAAACAAGCACGAGAACATTCCTTTCGAAGACCGAAGCTCGTCGCTGAAAGTGGATTTCTTATGGTACGCAGAAGTAAACAACTCTATGAAGGATCAGTTGATGTCATGGACCGAGaaaacCGCCATGAAACCAGATATGATCGTCGTGGGAGCTGCCACGTGGTCGATTAAGCTACACAATGGCAGCAGCGAGACGCTCCACCAGTACAAGGCCAACCTCACGGCGGTGGCGTACGTGCTGCAGAGGCTGGCCGAGAGCAGCGATGTGTTCTGGGTCCTGCAAGACCCGGTGTACGAAGACCTGCTGAGCGACAACCGGAAGATGATCACCAACCAGCAGATCGACTGGTACAACGAGGCGGCGCTGTCCACCCTGAGCAGCGCGGAGAGGAGCGCCGACCTCCGGGTCAAGATCCTCAGAGCCTCCCGTCTGGCCGCGCAGGAGACCATGTCCGAGTCGCTGGACGGCCTCCACCTGACCGAGAGCACTAGAGACGTCGGCACGATGGTCCTAATGAACTCCGTCTGCAATAAGATCTTGAAACCCATCGACGGCTCGTGCTGCCATCCCCCGCCGCCCGCCACCACCGTCCAGCTGCTCACCGCCTGCTTCTTCCTGGCGGCCATCGGCGGCTTCCTGGCGCTGAACGTGCTCTGCTCGGAGCGGCACCGTAGGGGTAAGCACATGGCCGACGTGGAGAGCGGCGAGGACCGCAAGCCCGCCGGCGCCAACGCGGCCGCCACCCTGAAGGTGCCGTTCCACGCCGTGTGCAAGCTGGGCCTCATCATGGCCTACTTCTACCTGTGCGACCGGGCCAACGTGTTCATGAAGGAGCAGAAGTTCTACACGCACTCCACCTTCTTCATCCCCCTCATCTACATCGTGGTCCTGGGGGTTTTCTACAACGAGAACAGCAAGGAGACAAAGCTGCTCAATCGGGAACAGACGGACGAGTGGAAGGGCTGGATGCAGCTCGTTATTCTCATCTATCACATCTCCGGTGCCAGCGCGTTCATTCCCGTGTACATGCACGTCCGGGTCCTGGTCGCCGCGTATCTGTTCCAGACGGGCTACGGCCACTTCTCCTTCTTCTGGCTGAAGGGAGACTTCGGCCTGTACCGGGTCTGCCAGGTCCTATTTCGGCTTAACTTCCTGGTGGTCGTGCTGTGTCTGGTGATGAATCGATCTTACCAGTTTTACTACTTCGTGCCATTAGTAACTTTCTGGTTTGCGGTCATCTATGTGACTTTAGCGATGTGGCCCCAGATACTCCAGAAAAAAGCTAACGCCAGTGGGATCTGGCACCTGGGCGTGATGCTGAAACTGCTGGCCCTGCTGCTGTTCATCTGCTTTCTGATGTATTCGCAGGGAGCTTTCGAGAGTATTTTCTCCGTCTGGCCGATATCCAAGCTGTTTGAGCTGCAGGGGAGCGTGCACGAGTGGTGGTTTCGCTGGAAGCTGGATCGTTTTGCCGTGATTCATGGGATGCTGTTTGCGTTCGTGTACCTGCTGCTGCAGAAGTGCCAGGTGCTGTCCGAGGGCAAAGGAGAGCCGCTGTTCTCCAACAAAGTCTCCAACTGTTTACTCTTCGTTTCGGTCGTGTCTTTTCTGACCTATTCCATATGGGCGAGCAGTTGCAGGAATAAGACCGAGTGCAATGAACTGCATCCCTACATATCGGTTGTACAGATTTTAGCTTTTGTTCTCATCAGGAACATCCCTGGCTACGCGCGTTCTGTTTATAGTTCATTCTTCGCATGGTTTGGCAAGATCTCTTTAGAGCTGTTCATCTGCCAGTACCACATCTGGCTGGCCGCCGACACCAAAGGCATCCTGGTGCTGATCCCGGGAAACCCCATGCTGAACATCGTGGTGAGCACCTTCATCTTCGTCTGCGTGGCCCACGAGATCTCCCAGATCACCAACGACTTGGCCCAGGTCGCCATTCCCAAGGAGAGCCCGGCGCTGCTCAAACGGATGCTCATCACGGCCGTGTTCTTCATGGCTGTCCTGGTGCTGTCTATGCGCGAGCGGCCCGGACACTGAGCCCCCCTCGGGCCGCGGCGCCCCCCGTAACGGACGCCCCCGAGGGGAAGAGGGGGGCCGGACGCTGTGTGCGTGGAGGAGGCGGCGCTTTGTCGTTCTCGTGACGAGTGAAGCACCGAAGGACAcgacagttttgttttgtttttttgaataCAAGCAACTCGGCATCGTCTTGCTTTGATTTTTTCAATGTCTGttacacaaaaaaagaaggaaCAACAACAATCCTCGAGATACCTGGACACTCTGTATTTAAGTGTAAATTGAGGTGTTTCATACCGTTTTCTGTGCTCGTCGTTGTGGGTGGGTTTATTTTCTGTCCCTGAGACTGAAACTCGGACGGAAGTTCAGGCGTTTgtgactgtgttttgtttttattgtgactgAATCTTATTTCAGACCACGCAGAAATGCACTTTTTAGGTACCTTGAAACGTTTAGGAGGTCGTTAgatattattttgctttctgaCTTTAATGCTGCCGTCTGAGGGGTGAACAACCACTTTCATcactatatagatagatatagagcTGATCAATACCTCTTGATAGATGTTACCCCCATACGTCAGTAGCCGGGGTACCTGTGGAGctgaatttagttttgtttggttCTGCCTCGGGAGCCCGGACTGTCCCTGCCCGTCCCAATGCCTTGTACTGAAAGGGTCAAAGCGAGTGGGTTTGTGCGATTGCTCTGCAGccacatatacatttgtatctgatcttctatttattattatacatctaCAAATATTTATTCCTGATATAAGTAATTTATTATGAGATTTAAAGTTATTGTTAATAGAACAGTCTTTCCTCTGGAGGTCCCGAGGCCCGGCCGAGACCCCCAGCATCGAGGGATTCACCCGGCTTGAATGCGGTTTCTGACGAGCAAATGTCTATGGTACATTTCTTCTATTTCTATTAATCTCAAACACAGGCTGAGGCCTCCACGCCTCTCCAGTCCAGTCAGACCCACCGTGTCGACCCAGAGGCCCGTCTTACTGGACGCAGTGGTCCACAGACGAGAGCCGTCGCAGTTATTGTTTCTGTCCCCCTTTCATAAACACTGGATGTCGGAAAATATTTCCCCTTGTGGTCTTCCTTCGCCACAAGTGTTTTTCCACACACCAAAATAATGACAGGGGGCCGAGGAGGGGATGGGGGTCTGTACTGTCAGACGATTCTCTTTTCTTAGcagatttcttttgttttttaccgCAAGGGTTTATTTTCCTCCAGTTCCAGTGGATTTTAGGGTGTTTTGGAATGATCGTGGCTACAAGGGTAGCTGTGATGAACGCTGAGGTTGTGCTAGCTCatttattattcctttaaatGTTGCTAATGCTAcgcagtgacacacacacaaccacaatgGCCGCCAACTGGTGACAGTTTGGGGGGACAAACTATTTCCCACCTCCCTTCTTACTGACCAAATACCCTAGTCAAGGCCAGtacctttgtttcttttcaaagtcATGGGGGTCCGTGTTTTGATACTTATTTCACTTCGAAGATCTTCGTTTTCCTCACCAAGGTGTTTTGCAAATGTGTATGGACagatataatttaatacaagtGACCTGGACTTCATTTGAGACTCGAAATCAGCTCTGTTTTCAAGAAGACGAAAGGAAGATGTTTAGAATGATTAGAATAGGAATAAATGCTTTAGGTCTCCAACTGGACTGGACTTCGGCGTATGAATGTCCCAAAATGTGTACGAAATGCGTTTAAGCACTGAACACGGTGGTCTTTAAGCCACAAGCTTCTTGAACGGGTATTCTTAATTTGTAATTAggtctgaaattaaatgaaagctttTATACAGATGTTAACGTGCTTTGTGTTATAACTGAATGAAGGCCTTTATATAGAGTCATTGTTTACCTGTCTTTATTTAGCATTATCGTGCGCATGGCCTGGTCATGTGACCGAGGGACAGCACActgttgtgtatatttttgttatttttgctgttattatttaagAGAAAGACGCCAGTTACATGTTGATGAGccttgtttgttctttttgtcGACTCATGAATAGAGGGATGTTGTGTGTAGATCTTCCTGTGGTTTCTCAAGCTGACCTTcgaccatttttatttataaatgactTTATTCTGTtgaatataatttatgtttatgatAAAATTCCTTCTTAAAA

Function

GO: NA

KEGG:

id description
K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108205 lncRNA upstream 127396 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 209132 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 215488 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 282443 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 328550 20500786 ~ 20501303 (+) True G86665
TU108243 lncRNA downstream 58603 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 66393 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 192678 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 329666 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 394677 21237101 ~ 21238163 (+) True G86859
AMCG00021537 mRNA upstream 2562 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021535 mRNA upstream 47680 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021532 mRNA upstream 108589 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021528 mRNA upstream 240557 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 266227 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021541 mRNA downstream 32699 20875123 ~ 20886781 (+) True AMCG00021541
AMCG00021540 mRNA downstream 48466 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021542 mRNA downstream 61964 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021539 mRNA downstream 66393 20908817 ~ 20912002 (+) True AMCG00021539
AMCG00021544 mRNA downstream 87380 20929804 ~ 20940208 (+) True AMCG00021544
TU108198 other upstream 161926 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 428604 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 428604 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 449429 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1328611 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 255995 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 256168 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 316200 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 387428 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 387428 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028305 True 2862 mRNA 0.47 18 NC_007130.7 41006975 ~ 41034224 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02514735_02525669.mRNA True 2413 mRNA 0.47 16 CI01000054 2514659 ~ 2525669 (-)