RNA id: AMCG00021537


Basic Information

Item Value
RNA id AMCG00021537
length 5501
RNA type mRNA
GC content 0.57
exon number 47
gene id AMCG00021537
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20797698 ~ 20827291 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGGCAGCAGGTTTCTGCTAAGTTTGGAGTTACTCTGGTCACCACAACTGTATGCCTGCTTGTTATAATTAAAACCCAGGGCTCTGCAGCACAAGGAGTCTGCATGTCTGATTACTAGACATGCTCAGCTTTGTGGATACTCGGATTGTGTTGCTGCTTGCAGTAACTTCTTACCTAGCATCATGCCAATAAACCCTGTCCGCGTGGCTGACGCTGCCGTGTCCGTCCCTCTGTTCTCAGGGTCCTCGAGGTGCAAACGGCAGAGATGGTAAACCCGGACTTCCTGGCCCACCCGGCCCCCCTGGACCCCCTGGCCTCGGAGGAAACTTTGCTGCTCAGTATGACCAATCCAAATCTGCTGATCCCGGTCCAGGACCCATGGGCTTGATGGGAGCAAGAGGACCCCCCGGACCTCCTGGCTCTCCTGGCCCACAAGGTTTCCAGGGACACCCCGGTGAGCCAGGCGAACCCGGACAGACTgGCCCAGTCGGACCTCGCGGCCCTGCTGGTGGAGCTGGGAAATCCGGTGATGATGGTAACAATGGCAGACCCGGCAAACCTGGAGACAGAGGACCTGCCGGAGCTCAGGGTGCTCGTGGCTTCCCCGGAACCCCTGGACTTCCTGGCATGAAGGGACACAGAGGTTACACTGGCCTGGACGGACGCAAGGGAGAGCCTGGTGCAGCTGGTGCCAAGGGTGAAAATGGTGCTCATGGTGAGAATGGTTCTCCAGGACAGGCGGGTGCTCGTGGTCTCCCCGGTGAGAGAGGGCGTGCTGGCCCTGCTGGTTCAGCTGGTGCTCGTGGTAGCGATGGCAACAGTGGTCCCTCTGGCCCTGCCGGTCCTATTGGAGCAGCTGGTCCTCCCGGATTCCCAGGTGCCCTTGGACCTAAGGGAGAGATCGGAGCAGTTGGTGCCACTGGTCCCACTGGACCCCAGGGAGGCCGTGGTGAGCCCGGTCCCGCTGGAGCTGCCGGCCCTGTCGGACCCCCTgGAAACCCCGGAAACAACGGTCTTGCTGGTTCTAAAGGAGCTTCTGGCCCCCCTGGCATTGCTGGTGCTCCTGGTTTCCCCGGGCCAAGAGGCGGTCCCGGCCCACAAGGACCTGCTGGAGCGGCTGGTGCTAGAGGCAACAGCGGAGAGCCCGGCCCCGCTGGACCCAAGGGTGAGACCGGATCCAAGGGCGAGCCTGGCAACGTTGGTCCCCAAGGTGCCCCTGGCCCCTCAGGAGAGGAGGGCAAGAGAGGTCCCAATGGAGAGGCCGGCGCCAGCGGAGCTGCTGGCAACcgtggagagagaGGAACTGCTGGAACCCGTGGACTTCCTGGACTTGAGGGCAGAGCCGGCCCAATGgGCATGCCTGGCAGTCGTGGTGCCACCGGTGCCGCTGGTGGCCGTGGAGTTCCTGGTGATGCCGGCCGCCCCGGCGAGCCCGGACAGCTCGGCGCCAGGGGTCTCCCCGGAAGCCCCGGCAGCTCTGGACCCCCAGGAAAGGAAGGCCCATCTGGTGCCAGCGGTCAGGATGGACGCTCCGGACCTCCCGGCCCTGCCGGACCCAGAGGCCAGCCCGGTAACATCGGATTCCCCGGTCCTAAGGGCCCATCTGGCGAGCCTGGCAAGCCTGGCGAGAAGGGAGCAACTGGCCCCGCTGGTCTGAGAGGAATCGCTGGTCCCGATGGCAACAATGGTCCTGCTGGCCCCCCTGGACCCGCTGGCAACACTGGTGACAAAGGAGAACAAGGACCTTCTGGTGCTCCCGGATTCCAGGGTCTGCCTGGacctgctggagctgctggtGAGGCTGGCAAAGCCGGAGATAGAGGTATTCCCGGTGACGCTGGTCTCCCTGGACCCGCTGGTGCCAGAGGTGAGCGTGGAAACCCCGGACCTGCCGGATCTCAGGGCCCTCAGGGACCCATGGGCGCCCGTGGTCCTTCTGGACTTCCCGGACCTGATGGAAACAAGGGTGAGCCCGGTGCTGCTGGCCCCGTTGGACCTGCTGGCCACCAGGGTGCCTCTGGCATGCCCGGTGAGCGTGGTGGTGCCGGAACTCCTGGAGGCAAGGGCGAGAAGGGTGAGAACGGCCCAAGAGGATTCGAGGGTAACCCCGGAAGAGATGGTGCTCGTGGTGCTCCTGGACCCAGTGGACCCCCTGGACCCTCTGGTGCTAATGGTGACAAGGGTGAAACTGGTTCTTTCGGTCCCCCTGGACCTGCTGGACAACGTGGACCTCCTGGAGAGCGTGGTGAATCCGGCCCTGCTGGACCCCCCGGCTTTGCTGGTCCCCCTGGTGCTGATGGCCAAGCTGGAGCCCGTGGAGAGAGAGGTCCCGCTGGAGGCAAGGGTGACGTTGGTGCCCCTGGAGCTGCTGGTCCCGCTGGCAGCTCTGGACCCGCTGGTGCTTCTGGCCCCGGAGGTCCCGCTGGTCCACGTGGTGATGCTGGCCCTACTGGTGCTACTGGTTTCCCTGGTGCTGCCGGCAGAGTCGGCCCCGCTGGCCCTGCTGGAATCGTTGGGCCCCCCGGCCCCAGCGGCCCCTCCGGTAAGGACGGTCCCAGAGGTGCTCGCGGAGACTCCGGCCCAGCTGGACGCCCTGGAGAGCAAGGAATGGCTGGTCTGCCCGGTCCCCAAGGAGAGAAAGGCCAAACTGGAGAATCTGGTCCCCCTGGTCCCTCTGGTACTTCAGGCCCTCAGGGTATCCTGGGATCCCCTGGTATTGTTGGTCTTCCTGGTGCTAGAGGCGACCGTGGTCTCCCTGGCGGTGCTGGTGGAAATGGTGAGCCCGGTAAGCTGGGCCCCGCTGGACAATCTGGCCCCcgtggaccccctggcaacatGGGACCCCCTGGCATGACTGGACCCGTGGGAGAGGCCGGACGCGATGGCAACCCTGGTAACGATGGTCCCCCTGGTCGCCCTGGTGCTGCTGGGTTCAAGggAGACCGTGGTGAGCCCGGCTCTCCTGGTGGTGTTGGACCTGCTGGTGCCCCTGGAGCCCACGGACCCGCTGGTGCTGTTGGCAGACCTGGCAACCGCGGCGAGTCTGGTCCCTCTGGACCTCAAGGTGCCCTTGGCCAAGCCGGACCAAGAGGAGCTTCTGGCCCTCAAGGTCCACGTGGGTCCCAGTGGTGAGCAAGGATCTACCGGAGCAACTGGACCTTCTGGCCCAAGAGGTCCCCCAGGTGCTCCCGGTCTTCCCGGACCCGCTGGCGCTGCTGGTGGTGGCTACGAAATCGGCTACGATGAGTACAGAGCTGACCAGGCTGCCCTGAAGGCCAAGGACTACGAGGTCGATGCCACCCTGAAGTCCCTGAACACCCAGATCGAGAACCTGCTCAGCCCAGAGGGCTCCAAGAAGAACCCCGCCCGCACCTGCCGCGACATCAGACTCAGCCACCCCGAATGGAGCAGCGGCTATTACTGGATTGACCCCAACCAGGGCTGCACCATGGATGCCATCAAGGTCCACTGCGACTTCACCACCGGCTATACCTGCATCTATCCCCACCCTGCCAGCTTCGCCCGCAAGAACTGGTACAGAAGCTCTCAGGACAAGAAGCACGTCTGGTTTGGAGAGACCATCATTGGTGGCACTGAGTTTGCCTACAACGACGAGAGCCTGACTCCCCAGATGATGGCCACCCAGCTGGCCTTCATGCGCCTGCTGGCCAACCAGGCCACCCAGAACATCACGTACCACTGCAAGAACAGCGTGGCCTACATGGACGCCGAGACCGGCAACCTGAAGAAGGCCGTTCTGCTGCAGGGCTCCAACGACGTGGAGCTGCGCGCCGAGGGGAACAGCCGCTTCACTTTCAGCGTGCTGGAGGACGGCTGCACGAGACACACCGGCCAGTGGGGCAAGACAGTCATCGAATACAAAACATCGAAACCCTCTCGTCTCCCCATCCTCGATATTGCACCTTTGGACATTGGTGGAGCTGATCAAGAAATTGGTTTGGACGTTGGCCCAGTCTGTTTCAAATAAGTAGACTCatgataaattaaacaaaaagaaagaaaagaaaagaaatcaaaatcaaaaaatctCTCTcgccatttctgttttttttttatactgaatgCTGATTTCTTCTGCTCATCCACTTGCTTAAGCTCGGGCCTATCGGAGGAGACAATGGACTGAACGGAGCATTTGTGCAATGCAATTTAATACAGCCCCTTCCCCCCGCCCCTTTCCCCCAAGAGACGTGGGAATCACCTTGTTGTGGGACATGTcagcatttgtaaaataaaaaagtgaaataaaaacaatgaaagtaTGCACCATTTGTGGTCTTTGTATATCTTCCAAAGAGGAAGTTTAAAACCACAACTTCCAAAGGTTTGAACTACCTCATGCTTGTTTTAAAACCTGATCCACAtacttaatattttaacaaaggCAACTTATATCTCGGTCCTGTTAAAAAGGTGCTAAAAACAGTATTACACGGCTTAGATACTTGAAGCAGTGAAAATGGTGCTATACTCGGTGCTGCGTTTGAACAACCCAGCTCAAATCCTAACcacttttactgtattacaTTGTGTTGTACCGAAGATGGATTGTCACGCGGTTCTCTCTGATGACCCGTATTAAGCATGTGGATCAGTCCTAGgcctctgttttgtttttgttttgttttggttttttttctccctttttcttcAACCAGGTGTCCATGCTTTCAGCACATTTTTGTCCATTCGAATGGGTTTACGGAGGAATCTTTCTCTACGACAACAGCcaccaaaaattaaaaaaagtttattgtacctattttgtatatgtgagatgtttaaataaattgtgaaaagtTCTGAAATAAAGCATGTCCGATGTTCCGAAACACACCACTCAACGAGTAAAGTGCATTTATGTTACAAATGATCataccttttttctttgtttgttttcccaaagGGCAGAGATTTGGGGGAATCTTTTTAAAAGAAGCATCTGTATGTGTCTGGTGCCACAGGAACACTACTCATCACTAAGAGATATTGTTTTCCAATGTAATTATATGTAGATAAGCCCCCTTCCCCTCTGTGAGGTAACAGAATCAATTCCAAGATGGAATggaaaggaaaagcaaagaaatgagaagaaaactaaaaccatTGGCTTACGAAtgtcttttctttctcattcCACCTGGGTTCTTCATTACCTGTCGTGTGTTTGCAGTTGTCCCGTCTCCTGACACCACCCTCTTGTTTCCTCTTGCTTGAGGAAACCCATCTCTTCACGTTACTTTCCACCAGCTTGTACATATAACAAACCCTCAATCTCTGATGTAGTCGCATAGCATAGTCCAGGTTAAAATCTAATTGTATATCAGGTCATCTAGAGTTCCACGTCTTTCGAGCGAAAGGAAACTCATGCTGGTAAATAATACTCTGTTTATCCACATTTGAATCAGTGTTTCCTTTGACTGAAATGACTGAATTCCCTTTTTTTATCACTgtttcctaaaaataaaaagacatgtAC

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06236 COL1A; collagen type I alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108205 lncRNA upstream 95241 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 176977 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 183333 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 250288 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 296395 20500786 ~ 20501303 (+) True G86665
TU108243 lncRNA downstream 73736 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 81526 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 207811 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 344799 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 409810 21237101 ~ 21238163 (+) True G86859
AMCG00021535 mRNA upstream 15525 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021532 mRNA upstream 76434 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021528 mRNA upstream 208402 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021529 mRNA upstream 234072 20554493 ~ 20563626 (+) True AMCG00021529
AMCG00021530 mRNA upstream 246768 20532168 ~ 20550930 (+) True AMCG00021530
AMCG00021536 mRNA downstream 2562 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021541 mRNA downstream 47832 20875123 ~ 20886781 (+) True AMCG00021541
AMCG00021540 mRNA downstream 63599 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021542 mRNA downstream 77097 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021539 mRNA downstream 81526 20908817 ~ 20912002 (+) True AMCG00021539
TU108198 other upstream 129771 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 396449 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 396449 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 417274 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1296456 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 271128 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 271301 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 331333 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 402561 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 402561 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028304 True 5750 mRNA 0.52 50 NC_007130.7 40983221 ~ 41002980 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_02529145_02537881.mRNA True 3060 mRNA 0.58 30 CI01000054 2528905 ~ 2537881 (-)