RNA id: AMCG00021538


Basic Information

Item Value
RNA id AMCG00021538
length 2862
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00021538
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20843663 ~ 20855774 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcgagaggaggagagggagggatgtaGAGGGGATGCTTGTCACTGTCAAACTGCGGACAATCACCACAAAACCCCCTTCGTTTCCAGCAACACACTATGGACCCTGTAGCCTTTCTCGTGTGTGTGTCCATCGCTCACGTAGTAAGCACTGCCGATGTGAAACACGAAGCTGTGTTTTGGAGGAATAGCCAAATCCACAGTTATTTCATCAACAGGCAGAGAGCAGCTGTGCAGACCAACGTCCACGCGCTGGGGGGGGGCTGGAGGTTGCTGCTGCATGGCTGGCGGCTGGTGCATGACTTacttctctttctctgcctcctgtctctctgtctgtctgtctctcgcCCCCCGGCTGCAGTGTTCACTATCCTCTCCAGGTCACACGCAGACCGCAATGTCTATCCATCTGCAGGGGTCCTCTTTGTCCATGTTCTGGAGAGAGAATATTTTAAGGGGGAATTCCCTCCCTATCCGAAGCCTGGGGATGCCAGCAATGACCCAATCACTTTTAACACTAATTTAATGGGCTACCCAGACCGGCCAGGCTGGCTGAGATACATCCAGAGGACCCCCTTCAGCGACGGCGTTCTCTACGGGTCCCCGACGGCCGAACATGTGGGCAAAGCAACGATCATTGAGATTACGGCCTACAACAGACGCACATTCGAGACCGCCAGGCACAACCTGGTCATCAACATCATGTCCGCCGACGACTTCCCTCTGCCGTACCAGGCCGAGTTCTACATCAAGAACATGAACGTGGAGGAGATGCTGGCCAGCGAGGTCCTGGGGGACTTCCTGGGAGCCGTGAAAAACGTCTGGCAGCCAGAGCGACTGAACGCCATCAACATCACGTCGGCGCTGGACCGGGGAGGCAGGGTGCCGCTCCCAATCAACGACCTGAAGGAAGGGGTGTACGTGATGGTGGGAGCCGACGTCCCCTTCTCCTCCTGCCTGAAGGAAGTCGAGACTCCGCAAAACCAGCTGAGGTGCAGCCAGGAGATGGAGCCCATGGTCAGCTGCGATAAGAAGTTCAGGGCGCAGTTCAACATCGACTGGTGCAAGATTTCCCTGGTCGATATAACGAGAGTGGTCTCCGTCATCAAGGAGAAACCAGACCCTGGCAGCGGGGTGCTGCCCGACATCGGAGAGTACAACCCGCCCTCGGACTCGCTGAAGAGCCGGGACTACTTCTCCGACTTCCTGCTCACGCTGGCGGTGCCCTCGGCCGTCGCCATGGTCCTGTTCATCATCCTGGGCTACGCCATGTGCTGCCGCCGCGAAGGGGTCATCCAGCTGGTCCATCACAGTTCCATCCAGAAGTCCACCAAGGATCTGAGGAACATGTCCAAGAACCGCGAGATCTCCTGGCCGCTGTCCACCCTGCCCGTGTTCCACCCCGTCAGCGGCGAGATCGTGCCGCCGCTGCACCCGGACAGCTTCGAGACGACCAGCATGCCCCTGATGCAGACGCAGGCGAATTTGCAAAATCAGACTCAGATCCCACAGCAGCCCTCAGGTGAGTGTGCATCGACTGTATAAGCTGCTTGGAACCACACACATCAAGAAATAGATCATTCAAATATTGCCAAcatcagcaacagcagcagctcctccacaCAAGCCAACGCCAACGTCTGATCGAATGTCTGAGTGTACAGAGATGTGGTTCCCCGGTGCCCCCTAGTGTACAACTGAATTAACTTCATTTATTGCAGAAGTTGTTTTTTTGATGGGGTTGGGATGGGCTTCTAACATACTAAACAACACATTTGTCTATTTATCTGCTGCTCTCAATGAAGGAGGTAATTATTGTATGTCAACGTTTCGACGGCTGGAGGCAAGTACCATGTTTTGTATTGGATGTTTCGGTGCTGTTGGGTCCGTGTGTTTGCATGTCTGAATAATTAGTTACAGTTCGAGCGGCAGTGTAGAAACTGCACCAAGTCTTTACACCTGACATCGAACCCCTGGCAGACGGGATAGAAACCCTAAACGTGGGGTCAGTTTGCTCCCAGCTTTACTGATTGAGATCATGCTGTCcaggtttaaaaacattttcatgccGATACAAATCCAGTGAAATGGTTCTATTTAATCTTAGCGTGTGCATAGTTGAATTATATTCACCTTTTATCTTTTGATACTGATTTCGTACACCCCACGCTGATTCAAAGAAAACATCTGCATCTCTAGCTTTTTTTATTACCTCCGTCGTGGGTTTGATACAACTATTTCATACCAAGGTGCATCTTCACAGAATTAagtgttatttacattttgttgatgATACAGCTAATAAGAAAAATGGTACTCTTCATCTAAAAAGCTTGCTTAGTATTGATTAGTATGTGTGGCTACTAATAAACGAAGCACATTAATTGCtctctttatttatattatgtttccTTCTCCTTTATTTCAGGTAAATGGTATTCCTGAAGAGAGGAAACTGACAGAAGCACTGAATTTGTAACTGATCAGCACTACACGTTTTTTAATACACGACTGAATGGAATTTTCTGATGTTACTGCCGATATGCATGTGCCAAACGTAGCTCGATACCCAATACTTCGATGTCATTGTGCAGATGTGTTCAGCGTTGCAGTAGACTAATacgttaaaaaaatatatatactggcaaaataaataattggttcATTTGTAAaggattaatattttttaatattttgtgtatcattgaatctgtatttttaaagatatcagatggaataaaataatcaatttttatACCTGGGCTATAAATAGTCATTTTGGTGTCCTGCTCAAACCACTGCAAAGAAGACCGAGATATATAGTTAttagtgtagaattgagaacaagggcagtgatgttc

Function

GO:

id name namespace
GO:0016012 sarcoglycan complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108260 lncRNA downstream 12741 20828259 ~ 20830922 (-) True G86740
TU108257 lncRNA downstream 16366 20824022 ~ 20827297 (-) True G86739
TU108256 lncRNA downstream 19699 20823000 ~ 20823964 (-) True G86738
TU108253 lncRNA downstream 21060 20821632 ~ 20822603 (-) True G86736
TU108199 lncRNA downstream 229555 20612663 ~ 20614108 (-) True G86689
TU108398 lncRNA upstream 319932 21175706 ~ 21184318 (-) True G86848
TU108400 lncRNA upstream 330994 21186768 ~ 21188838 (-) True G86849
TU108401 lncRNA upstream 334065 21189839 ~ 21190932 (-) True G86850
TU108442 lncRNA upstream 435599 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 660258 21516032 ~ 21516234 (-) True G86893
AMCG00021534 mRNA downstream 118841 20722370 ~ 20724822 (-) False AMCG00021534
AMCG00021533 mRNA downstream 150439 20689347 ~ 20693224 (-) True AMCG00021533
AMCG00021531 mRNA downstream 204707 20618070 ~ 20638956 (-) True AMCG00021531
AMCG00021525 mRNA downstream 383385 20444543 ~ 20460278 (-) True AMCG00021525
AMCG00021523 mRNA downstream 408612 20414530 ~ 20435051 (-) True AMCG00021523
AMCG00021545 mRNA upstream 43297 20899071 ~ 20902765 (-) True AMCG00021545
AMCG00021546 mRNA upstream 60909 20916683 ~ 20926715 (-) True AMCG00021546
AMCG00021549 mRNA upstream 127826 20983600 ~ 21020401 (-) True AMCG00021549
AMCG00021548 mRNA upstream 179089 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021552 mRNA upstream 231101 21086875 ~ 21094522 (-) True AMCG00021552
TU108218 other downstream 118783 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 445880 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 483408 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 508359 20329422 ~ 20335304 (-) True G86600
TU107835 other downstream 1374930 19466060 ~ 19468733 (-) False AMCG00021495
TU108350 other upstream 208084 21063858 ~ 21083570 (-) True G86808
TU108883 other upstream 2299413 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2482477 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4547876 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 5049670 25905444 ~ 25908005 (-) True G87806

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00029530 True 1457 mRNA 0.51 10 NC_007130.7 41039028 ~ 41069701 (-)