RNA id: TU108236


Basic Information

Item Value
RNA id TU108236
length 2500
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00021539
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20908817 ~ 20912002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggggccagggatgagaaggagcggctctggaggaaggagagtggagaggaggtgcccaacaccttactgatacactttatgtgggtttttcctttaatttgtcacctgactgtatatgtattcatgAATAAAACCCGAATGTCATGTTCAGCGGCTGTTAAAACGTAAAACAGCAGACACCAGTGAAACCAGAACATCAAACCCCAAACCTTGACAACACTGCCCAGAGATCCCATGAAGGAGAACGAATATGCTTTGCAGAACGTCGTCAACCCACAGCAAAATCTGCACGTTCTAGATTCCACACAGTCCGTTTCTTCTCCACACACAGTCACGGACACCTGGCTCACtggagtgtttgtgtttctttgtcaCCGgtagcttgtttgttttgcaggctGGCTTTGGCTACGGTCTGCCCATCTCACGTCTCTACGCCAAGTACTTCCAGGGAGATCTGCAGCTCTACTCCATGGAGGGATACGGCACATCTGCGGTTATTTATCTGAAGGCCCTGTCTACTGACTCAGTGGAGCGGCTGCCCGTCTTCAACAAGTCCGCCTGGAGGCACTACCAGGTGAGCCAGGAGGCGGACGACTGGTGCGTTCCCAGCCGCGAGCCCAAGAAACTGGGGAAACACGACTCCGGTGCATGAGACCATGAGGACGACCGCCGGACCCTCCACAGGCCGGCCGTCCGGGTTACCGATGGGAGACGGGGAACTCGTGggaccagacagacagacagacggacactTTTACCCGGACCAGGGAGGGTTAATCACAGCAGAACTTTTGGAGCAGGGGTGCAAATCCTGGTTCCTAATCTCTACAATAACAGGACTCCAGCTGACACGGACAGGGACTGAGACTGTGAATGTAAAGGCCATAAACGGTTAGTTACACTTCTAGGGTGTCTAGCAATCTTGTGCGTCTCCGTGTGTCTGGGGGACgcctggttttgtttgtttattcttgatTTTTAAGATTGAAACGGCGGCCAGTAAAATTGAGGTTAGTGTCGTCGACTCCGACAGCAGCCTAAACATGCGGGCGGGTAACGAGTGTCACCGAGTCTATATGTGGAGTTGTCGGTTTGCCATTCGTGCCCTAATCAGCATTTTCTTTGTGCGAACAACATTCGTCCTATTCCACCATCTAGTCCAAAGAGAGCCCGCGttgaccagagaattttgtttttcacttgccTGTAGTCGTGTCTCTAGTTCTTCTGGGAACACAGATGTTTTAGGCATTACTGTAGGGTCATATAAAtggaggaggacaaccccagTCTCACTCCTGACTGCTGCGTTCCTGAGCTCGTTATTATTTCCCTTCTACTGTACTTGTCTGTTGGGGTTGTCCGCACTCCGGAAGCTACCAGTATCATTACTACAAGTTTCATAAAACCTCCACACACCTGTGTCCCCACATGTGACCGTAAAGCAATAGCGTATCGATTCAAGCTGTGATTCATTGGTGTTTGAGCCTTATTGACTGAAGGCCAGGACTCATTGGGAATAACAAACCCTGGAAGAGACCCAGTCCTTTAGAAGCGTTTTAACTGCATGTGCAGATCTGTTATGGATCCAACGGttgaactattttatttttgtattattttagaatGAAGAATATCAGTCGTACACTTGGACCAGATTCAGTCCcgtttttgtttcattgctttTCTCAAGCGTGACTCATTCAGAGTCGCATGTTTTGTGAAACACACAGAATACCGGCTCTGAGAGACCGAACTGCGCTGCGATGCGACTCGTCTGTCTGGGACTGTGACTGTGCCGGGTGTCACGTcacaatcattaaaatatacagaatgaCGTATATAAACCTTTATACTATTCATTTGTGTCGTTTTTATTCACTGTTCATTTCATggttcaatatttgttttaatcggTGTTGTTTATCATAATTGATCCACTTTTTAAACATTCTTCATTTATGTCAGCATGCAGCCCTtctgttaatttgtttaacTGGATTCGGGAGGCGACCAGAGGAAATTCGGAAACAAATTGGCAGACTGCCGGGGATTTAACAAACAGTTTCAAAGTTTAGAGTCGGACTCACAGGCCTAATTGTATGTCTGTTGCACTTCTTACTCGGCAGTATTAAACACATGGGTTTCAAAAGGTCATGAGCTGAAAGAAACTAATTTAGTCACaaagattttatatttaaacaagaaGATGGAAAATTAGCTTTGATTTCTTACTattcacaaaaaaaatcaatgtgagGTATAATGTCTCGCTCGTTATCGCACAGATTTCCATGTCGGCCACCTCTCTTACTGACCTCAGATTAAACGTTTCTTTCTTCAGAGTATTGCTGTTCTGTTGCGTTGCTGTTGTATTGTCTAATCTCCACAATGCCTTATTTTCTGGGTGCCAAACAATGCAGTAAATGGGGTGTGTCTATGTTTTCTCCACGAATGTAActtggaaaatgaataataaataacaatatatctAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108243 lncRNA upstream 5962 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 206360 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 288096 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 294452 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 361407 20508508 ~ 20547410 (+) True G86668
TU108340 lncRNA downstream 123110 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 260098 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 325109 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 329674 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 329674 21241666 ~ 21243017 (+) False AMCG00021560
AMCG00021542 mRNA upstream 1031 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021540 mRNA upstream 10369 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021541 mRNA upstream 22036 20875123 ~ 20886781 (+) True AMCG00021541
AMCG00021536 mRNA upstream 66393 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021537 mRNA upstream 81526 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021544 mRNA downstream 17812 20929804 ~ 20940208 (+) True AMCG00021544
AMCG00021543 mRNA downstream 45237 20957229 ~ 20980625 (+) True AMCG00021543
AMCG00021547 mRNA downstream 165953 21077945 ~ 21080685 (+) True AMCG00021547
AMCG00021550 mRNA downstream 186510 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021551 mRNA downstream 246741 21158733 ~ 21165500 (+) True AMCG00021551
TU108198 other upstream 240890 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 507568 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 507568 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 528393 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1407575 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 186427 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 186600 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 246632 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 317860 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 317860 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile