RNA id: AMCG00021541


Basic Information

Item Value
RNA id AMCG00021541
length 1110
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00021541
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 20875123 ~ 20886781 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgATCGGTGCCCTGACCCTGCTTGTGTTTCACACTTACTCCGACGAAGACTATGACCGGAGGAATGAGGAGGTGGACCCTGTCGCCGCCTCGGCCGAGTACGAGCTGGAGAAGCGCGTGGAAAAGCTGGACCTTTTCCCTGTGGAGCTGGAGAAAGATGAGGATGGCCTCGGGATCAGCATCATCGGGATGGGTGTCGGGGCAGACGTGGGTTTGGAGAAGCTCGGCATCTTCGTCAAGACCGTCATCGAAGGGGGAGCCGCGGAGAGGGATGGCAGAATCAAGGTTAACGACCAGATCGTGGAGGTGGATGGCACCAGCCTGGTGGGAGTCACCCAGAACTTTGCCGCTGCCGTCCTCAGGAACACGAAGGGCACAGTCAGGTTCGTGATTGGCCGGGAGAAGCCGGGCCAAGTCAGTGAGGTGGCGCAGCTCATCAGCCAGACCCTGGAGCAGGAGCGGCGCCAGCGGGAGATGATGGAGCAGCACTACGCCCAGTACGACGCGGACGACGACGAGACGGGGGAATACGCCACAGACGAGGAGGACGCCGCGGGGCCGGACCTGCCGGGCAGGGACATGGCCATCGAGGTCTTCGACTTACCCGAGACAGAGGACATATTCTCCCCCACAGACATTGACACCGCCAAGCTCTCGCACAAATTCAGAGAGTTGCAAATAAAGCACGCTGTCACTGAAGCAGAAATACAGAAGCTCAAAAGCAAgTTGCAGTCTGCGGAGAGCGAGAAGGGCggctgggagagggagaagacCCAGCTGCAGAGGAGCATAGAGGACAACAAGGAGAGGATGCTGAAGCTGGAGAGCTACTGGATCGAGGCGCAGTCTCTGTGCCACACGGTAAACGAGCACCTCAAGGAGACGCAGAGCCAGTACCAGGTGCTGGAGAAGAAGTACAACAAGGCCAAGAAGCTCATCAAGGACTTCCAGCAAAAGGAGCTCGATTTCGTCAAGCGAGAGGAAGCCGAAAGGAGGAAGTTCGAAGATAAAGAGAAAGCACATCTGATGGAAATCCAAGGCCTGCAAGCCCGGGTATGTATCTGTGAAAAGTTGAGAGTTGCCACTGAGGACGGGGGTGTTGTCTTCGTG

Function

GO: NA

KEGG:

id description
K17551 PPP1R9; neurabin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108205 lncRNA upstream 172666 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 254402 20620506 ~ 20620721 (+) True G86687
TU108195 lncRNA upstream 260758 20612626 ~ 20614365 (+) True G86685
TU108178 lncRNA upstream 327713 20508508 ~ 20547410 (+) True G86668
TU108173 lncRNA upstream 373820 20500786 ~ 20501303 (+) True G86665
TU108243 lncRNA downstream 14246 20901027 ~ 20902855 (+) True G86727
TU108236 lncRNA downstream 22036 20908817 ~ 20911992 (+) False AMCG00021539
TU108340 lncRNA downstream 148321 21035102 ~ 21038425 (+) True G86800
TU108380 lncRNA downstream 285309 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 350320 21237101 ~ 21238163 (+) True G86859
AMCG00021536 mRNA upstream 32699 20829853 ~ 20842424 (+) True AMCG00021536
AMCG00021537 mRNA upstream 47832 20797698 ~ 20827291 (+) True AMCG00021537
AMCG00021535 mRNA upstream 92950 20734714 ~ 20782173 (+) True AMCG00021535
AMCG00021532 mRNA upstream 153859 20703104 ~ 20721264 (+) True AMCG00021532
AMCG00021528 mRNA upstream 285827 20577693 ~ 20589296 (+) True AMCG00021528
AMCG00021540 mRNA downstream 4109 20890890 ~ 20898448 (+) True AMCG00021540
AMCG00021542 mRNA downstream 17607 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021539 mRNA downstream 22036 20908817 ~ 20912002 (+) True AMCG00021539
AMCG00021544 mRNA downstream 43023 20929804 ~ 20940208 (+) True AMCG00021544
AMCG00021543 mRNA downstream 70448 20957229 ~ 20980625 (+) True AMCG00021543
TU108198 other upstream 207196 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 473874 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 473874 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 494699 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1373881 19499800 ~ 19501242 (+) True G86407
TU108360 other downstream 211638 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other downstream 211811 21098592 ~ 21109368 (+) False AMCG00021550
TU108371 other downstream 271843 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 343071 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 343071 21229852 ~ 21231488 (+) False AMCG00021561

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_02439354_02469735.mRNA True 1617 mRNA 0.51 15 CI01000054 2439354 ~ 2469735 (-)