RNA id: TU108358


Basic Information

Item Value
RNA id TU108358
length 1926
RNA type TUCP
GC content 0.47
exon number 2
gene id AMCG00021550
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21098419 ~ 21109368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCCGGTGCTGTTACAATGTTGCACCGCTTTGGCTGTGGCGCAGCTGCGCAGTGACGCGCTCGTGTGTTGCCGGCGATCACAGTGCGCTGCAGCCGGTGAGTTTCTATTCCCGGTCAGTGTGACCGAGTCCTGCACAGCAATGCGTCATACATGCCCTGCCCACGCGTGTGTTATCGCTGCAGCGGATGATAACAtggcacatgtgtgtgtgtgttgatccCAGGGGAAGGTCATGTCCGGCCCGGCCCATGTGTCCAGAGTGCGGCTCCTGTACAAGCGCATCCTGCTGCTGCACCGCTTCCTGCCGCTGGACCTGCGGGCGCTGGGGGACCAGTACGTGCGGGACGAGTTCAGGCGGACCCGGGGGGCCACAGCGGAGGAGGCCCGGGGCTTCCTGGCGGAGTGGGAGGCCTACaagaacacactgcacacccaGGTGATGGAGTCTGTGACGAAGAAAACCGAGGGAATTCGCTTTGGAACCGATCTTTCCGGGGAAAAACTCGCCCAGTTTCAAGACTCCCAGATTGGACAGCTGTATGAGCTGATGCAGGAGGCAACGAAACCCAACCGGCAGTTCAGCTTTCAGGACGACCACCTTCCCAAGTAGAGGCTGACACGGCTGTCACTCTGGAGCGAAGGCTTGCCGGTTTGAAACGTGTTGTGGTGCAGTACTTGAGTTCCTGTTCCTGTTAATTGCAGCCATTAAGATATGCCATTACATTAAAGTACTCTGAGAGGCTGTTGAAACACAAATGAGTCTTCTGGATTACTTTTCTTACCAAGTTAttgtagaaaaagaaaaaaagagccCTTGTGGTCAAACTTAAGACAAGGAAATGTTTCACTTTGCAGCCATCATCTCGTGACTCGAGTGATCTCACCGCCGTGTGTGGTTGAGTGTTGAGACGTCAGTCCTCTCAGAGAGTGAATGGTACTTGTGTTCATGTCAGCCCATTAGTTCTGTCCAACACAACCCTCCATCACAAACTTCCAATATTTTTCCCAGAAGTTTAGAAACTCTCGCAACTATGGCTGCTAATCATGTTTTAATCAGAAACATTGTAGGTtgctaaaaagaaaagaaaaaggtgcCCTGCCTTAATCTGCAAGAGAAAGTACTACTTACACCACAACACCGATCTACTGAAGGCATCCATGTCATACCAGCTGGTGATCCTGGCATcgtttgtattttactttgttgCAATATTTTTAATCAGAAACACTCCACGATGAAGCCTACAGTTCCATGTGTGCAGCTTCCGAGCGCTGTGAAGTCAGAAAAGATGCATCTCCCCTGGGTCTGTTATCAGTATTGCTCAATTAGGGGGTGGGAGATGACCTTTGACTTCCTGGTGGTCAGTTCAGAACCTTCCAATGTGTCACCTGACCCATCACACAGATGTCTCTCTTCGGGAAAGCATGCTTCAAGAGCGCATCTCATTCAGCATGAAGGAGATTGTGGTTTTGCATATTGTTGCCCTGGGGGGTAAGAGTGTTTGCTaaggattaataataatgtgaatggtgatattattattattattattattattattattaataataatattattaacaaaGCTCAAAACAGACATAACGTATCAAGCTGGGAACATTTGTCATATCTCGCTCCTCCGTTTGTATACAGAGCTGTGATCAGTATCATTCTAGTCAGACGGTCTCTGATAACTCGAACCACCACCTGCACCCCAGGGATTGGCAGCTGAGCAAAGTGTTCCTGCCAGGACCACCTAAACGGAGAAAGAAACGCTACAAAAAGGCCACATTTGGAAGTATTTTCTATAGTTTACTGATTCTagtaattgatttttaaattttttaatcacaagtattgcaattttgaatgtttttatctgtaaaatgtaaaatactttcaccTAATAAACAGTTTACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108340 lncRNA upstream 60167 21035102 ~ 21038425 (+) True G86800
TU108236 lncRNA upstream 186600 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 195737 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 396135 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 477871 20620506 ~ 20620721 (+) True G86687
TU108380 lncRNA downstream 62722 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 127733 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 132298 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 132298 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 186163 21295531 ~ 21297780 (+) True G86884
AMCG00021547 mRNA upstream 17907 21077945 ~ 21080685 (+) True AMCG00021547
AMCG00021543 mRNA upstream 117967 20957229 ~ 20980625 (+) True AMCG00021543
AMCG00021544 mRNA upstream 158384 20929804 ~ 20940208 (+) True AMCG00021544
AMCG00021539 mRNA upstream 186590 20908817 ~ 20912002 (+) True AMCG00021539
AMCG00021542 mRNA upstream 190806 20904388 ~ 20907786 (+) True AMCG00021542
AMCG00021551 mRNA downstream 49365 21158733 ~ 21165500 (+) True AMCG00021551
AMCG00021555 mRNA downstream 71434 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021556 mRNA downstream 83594 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021561 mRNA downstream 121421 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021560 mRNA downstream 145531 21254899 ~ 21255195 (+) False AMCG00021560
TU108198 other upstream 430665 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 697343 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 697343 20398926 ~ 20401249 (+) True G86601
TU108117 other upstream 718168 20378423 ~ 20380424 (+) True G86616
TU107857 other upstream 1597350 19499800 ~ 19501242 (+) True G86407
TU108371 other downstream 49256 21158624 ~ 21165032 (+) False AMCG00021551
TU108414 other downstream 120484 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 120484 21229852 ~ 21231488 (+) False AMCG00021561
TU108421 other downstream 125702 21235070 ~ 21236080 (+) True G86861
TU109135 other downstream 3065141 24174509 ~ 24177990 (+) True AMCG00021656

Expression Profile