RNA id: AMCG00021551


Basic Information

Item Value
RNA id AMCG00021551
length 2433
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00021551
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21158624 ~ 21165500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACGTACCAGTCGTGCATGTGTGCGTCACCGAGCTGTTTTTAAGGCGACTTGGACATCCCTCTTCCCAAAGGACATCAGCCCCCTGCAATCAAATACCTCGGGGACCCTGAAGGCGATTGAATCAAATATCGATCGTATGTAAAGTATACAAGCGGAAATTAGTCATAGGCTCTTCGAAATCACCTGCCAAAAAAGTAACTAATTGTTTTTAAGGACATTAAGAGACCCGACACCTCCCCATCTCCGGCTATAAAGCGCGCTGCGAGACTCCGCTGTCCAAAAGCCATCCGAGCGCAGTGCTGGCAGAGCTGGAGCGGCGCGCTGGGAGCTGTGCTGAACCCTTGGATGGACAGGATACTGGGCTCGCAGGTGTAACTCTGACTGGGACCAAGCCAAGCCACGGGGACAAGAACCCAACCCTTGTGCATAGTTAGAACCGGTGCCGTTTCATTGCCTCTGatcctctctctcacacagcgCACCCCCAGTCTCTCTCCTGGAGAAGAAGCCCGAGGAGCTGCACCCAGCCTCCACAATGAAACTCTTACTATCGGTGGTGGTCGTTTTTCTTGTTGTAGCAGAAGTCCTCTGTGAAGAAATGGGTCCCAGTGAAGATCTCAATTATTGGACTGACAGCAATCAAATACAGGATGAATGGGTCCCACCTGATTCCTTTAAGGAAATCCTAAGAAGAATCACAAGGAAACCCAGACCTCATCAGTTCATTGGTTTGATGGGCAAGCGGTCTCCTTcaatCCCACAGATTACCCGTAAAAAGACGGGGGTGAATGGGACCTCACCCAGGACTGGGGCACAGCAGGGATTTGCTCTAATTGCCAAGCCACAGCCACGGCTGGCTTCACGACACTTAGCCAACATGGGTGACCCTGAACCGTTCGCAGTTCGCAGATTGTCTCCAGCCCCGTGGAACCCATGCAGCTCTGCGACCAACAGTGTGTGGGGCTCAGGCGTCCAGAAGATGTGTGGGCTGCTGCAGTCATTTCGGCATAAAATGAATTCCTTTGTTGGTCTGATGGGCAAGAGGAGCGAAGAGCCAGATTCATACGAATGGAGCACAATACAGAATTACGAGCAGAGGCGTTAGCAGAGCATCAGACGTGAATCAGAGAGTCTCTGATACTCAAAGACATTCCTGTCGATGGCGGGAGATGTGTCTGAAACATAcagtcagttttcttttttgtttgttttttttaaattataaataactgtCGATTAAACTGTAACATTTGACGAAGCTGTTATTTTCACATCGTGGTTATGCTAATTGTACCAGCTTTTCCAGGGATGGGGGAGGATTAGGTCAACTCTGTATTTATAAAACGGAAATCTTTCTCACTGTCTGTCACAGAATAAATCATATCTACTGTACTGAAATgagattttctttttggttACTGATGATCAGGAAAGtcggtcacactttaaaatggtGCGATTCCTCTCATGGAGTTGTATGTAGAGACTCACCCACGAGGAatggcattttacattttaaaatgtcaccgGAAAGTCTTACAGCCTGGGAGTGACGCACAGCGACACTGTGTAACatagtgcctcagagtttccgTTCCATACGTTGTACTGTAGtaaatatgcattcaaatatatttgtattgtcaCAGCATGGCTTATTCTTTGTGACtgtatattgttataatttttaaaCCAAGGTATCTAGGACaagtcattaaaatatttctaaGTTATTACCAGAGCTTTCATTCTTACCCAGTGTTTAACAAAATCTCGACCATCCTTTTGGCCCATCGCCGGACGTGGACGTAATTGAGCGCCAGGAAGAGAGGTTACAGTgaagagcacagagcacagtaaagtgtagcCGGGTTACTGTGAAGCGAGGAGAGGGGCCGAAGGCGAAGGGCAGCAAAGGCGTGGTGAACACACGAGAGAAGAACGGAAGAAGAGAAATCAGCATGCAGATGAGCGATGGGTAGAAATGAGTCCAGGTGCCCTGACTTTGGTTTCAGAGGAAAGGTGTGGTCGATGAACGCGGTGTTACCCTATTACCACAGACCTGTAGTGCCACTCAGACTGACtcagctggtgtgtgtgtgtgtgtgtgaatatatctCTATCCTTTTCATTATTAGTCAACACATATATATGTCAGAGCTCTGGTCAGGCCGTGGCCTAGCGGTCCTACACCGTCGTCAGCCAGTAACTGCCTGGGGGCgtccaataaattaaatgaatgcaaacaaaactgagtaattaTCCTATACAAATAATTCATCCTAGGCCTTGACACATCCCTCCTCTCGAGGCCCTCGCTTCAATGTAATTAGAACTACACAACAGAAACTACCTGCTCACACTACACCCCCGCAGCCTgaataaatgacaccataacGGACACCGATGTCCTCACCTGTACTGAAACCTGG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K05239 TAC1; tachykinin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108340 lncRNA upstream 120308 21035102 ~ 21038425 (+) True G86800
TU108236 lncRNA upstream 246741 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 255878 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 456276 20699214 ~ 20702457 (+) True G86695
TU108197 lncRNA upstream 538012 20620506 ~ 20620721 (+) True G86687
TU108380 lncRNA downstream 6590 21172090 ~ 21175659 (+) True G86833
TU108418 lncRNA downstream 71601 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 76166 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 76166 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 130031 21295531 ~ 21297780 (+) True G86884
AMCG00021550 mRNA upstream 49734 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021547 mRNA upstream 78048 21077945 ~ 21080685 (+) True AMCG00021547
AMCG00021543 mRNA upstream 178108 20957229 ~ 20980625 (+) True AMCG00021543
AMCG00021544 mRNA upstream 218525 20929804 ~ 20940208 (+) True AMCG00021544
AMCG00021539 mRNA upstream 246731 20908817 ~ 20912002 (+) True AMCG00021539
AMCG00021555 mRNA downstream 15302 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021556 mRNA downstream 27462 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021561 mRNA downstream 65289 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021560 mRNA downstream 89399 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021563 mRNA downstream 103703 21269203 ~ 21291092 (+) True AMCG00021563
TU108360 other upstream 49365 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other upstream 49365 21098592 ~ 21109368 (+) False AMCG00021550
TU108198 other upstream 490806 20667470 ~ 20667927 (+) True G86688
TU108101 other upstream 757484 20342610 ~ 20401249 (+) False G86601
TU108100 other upstream 757484 20398926 ~ 20401249 (+) True G86601
TU108414 other downstream 64352 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other downstream 64352 21229852 ~ 21231488 (+) False AMCG00021561
TU108421 other downstream 69570 21235070 ~ 21236080 (+) True G86861
TU109135 other downstream 3009009 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 4111276 25276776 ~ 25365977 (+) False AMCG00021682

Expression Profile