RNA id: AMCG00021558


Basic Information

Item Value
RNA id AMCG00021558
length 348
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00021558
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21239074 ~ 21241091 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGATGTGTATGATGTGCCTAAAGTCCGCGTCAACGCCAGCATGCTGTCCCAGTACATCAGCAAGCCCGTGTGCTTCGTGGGGCAGGTGGAGAAGGTTCATCCCACCGGTAGGTCGTTCAGCCTCCGAGACGGGGAGGGCAAGACCGCGTCCctggaggaggagctgagTGGAGTTGTGGAGGTTCTGGGACGAGTCACCAATAAAGCCACCATAACAGCCACCACCTACACTCTGTACCGGGAGGACCAGAACAGTTTTGACCTGGGACTCTACAACGAGGCTCTGAAGGTCATCCACGACTTCCCCCAGTACTACCCCTTCGAAGTCACAGCGAGAGACTGA

Function

GO: NA

KEGG:

id description
K10740 RPA3; replication factor A3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108401 lncRNA downstream 48142 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 50236 21186768 ~ 21188838 (-) True G86849
TU108398 lncRNA downstream 54756 21175706 ~ 21184318 (-) True G86848
TU108259 lncRNA downstream 384780 20825630 ~ 20854294 (-) False G86739
TU108442 lncRNA upstream 50282 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 274941 21516032 ~ 21516234 (-) True G86893
TU108475 lncRNA upstream 425311 21666402 ~ 21671315 (-) True AMCG00021569
TU108491 lncRNA upstream 543785 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 889715 22130806 ~ 22188140 (-) True G86997
AMCG00021559 mRNA downstream 1610 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021562 mRNA downstream 11267 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021557 mRNA downstream 33129 21195595 ~ 21205945 (-) True AMCG00021557
AMCG00021554 mRNA downstream 63724 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021553 mRNA downstream 98391 21109754 ~ 21140683 (-) True AMCG00021553
AMCG00021564 mRNA upstream 54506 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021569 mRNA upstream 427837 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021568 mRNA upstream 433200 21674291 ~ 21761907 (-) True AMCG00021568
AMCG00021572 mRNA upstream 594932 21836023 ~ 21855452 (-) True AMCG00021572
AMCG00021577 mRNA upstream 730198 21971289 ~ 21992069 (-) True AMCG00021577
TU108350 other downstream 155504 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 514194 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 841291 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 878819 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 903770 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1914096 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2097160 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4162559 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4664353 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4850163 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile