RNA id: TU108415


Basic Information

Item Value
RNA id TU108415
length 856
RNA type TUCP
GC content 0.65
exon number 2
gene id AMCG00021561
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21229852 ~ 21232853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCGGCGCAGGAAGTGACGCTTTGTTTCCGGGGGACGTATTTTGAAGCCGCACAGGGTAGCACGCGAGCGGCCCGCTTCCCCCCACAGAGTCAAAACAGAAACCGCGTTGATGCTGGGTTCCCTGGGGTAGCAGTGGCTGCCGGAGCTGGGAGAGATGAGCGGCACCAAGCCCGACATCCTGTGGTCTCCGCACCATGCGGACCGCTACGTGCTCTGCGACTCGGAGCTCAGCCTGTACCGCATTGAGTCCGTGGGCAGCGCCGAGGCCCGTGCCGGGGTGCTGCGGCTGTCTGAGGAGACGGCCGCCACCATGCTGGCCATCAACTCGGACACGCCCTACATGAAGTGCGTGGCCTGGTACCCAAAGCCCGAGCCGGAGTGCCTGCTGGCGGTGGGGCAGGCGAACGGGCGCGTGGTGCTGACCAGCCTGGGCCAGAGCCACAACACCAAGTGCAAGGAGCTGATGGGGAAGGAGTTTGTGCCCAAACACGCCAGGCAGTGCAACACCTTGGCCTGGAACCCCATGGACAGCAACTGGTTGGCCGCCGGGCTGGACAAGCACCGGGCGGACTTCTCCGTGCTGGTCTGGGACATCAGCAGCAAGCTTGCTCCCGAGGCCGCGGTGCCCACGGAGAAGATCCGCCTCTCGGCTGGCGACACCGACTCGGGCCTGGTGGTGACCAAGCCGCTGTACGAGCTGGGCCAGAACGATGCCTGCCTGTCGCTCTGCTGGCTCCCCCGGGACCAGAAGCTGCTGCTGGCCGGCATGCACCGCAACCTGGCCATCTTCGACCTGCGCAACACCAGCCAGAAGATGTTCGTCAACACCAAGGCCATCCAGGGCGTGACGGNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108380 lncRNA upstream 54193 21172090 ~ 21175659 (+) True G86833
TU108340 lncRNA upstream 191427 21035102 ~ 21038425 (+) True G86800
TU108236 lncRNA upstream 317860 20908817 ~ 20911992 (+) False AMCG00021539
TU108243 lncRNA upstream 326997 20901027 ~ 20902855 (+) True G86727
TU108205 lncRNA upstream 527395 20699214 ~ 20702457 (+) True G86695
TU108418 lncRNA downstream 5613 21237101 ~ 21238163 (+) True G86859
TU108424 lncRNA downstream 10178 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA downstream 10178 21241666 ~ 21243017 (+) False AMCG00021560
TU108445 lncRNA downstream 64043 21295531 ~ 21297780 (+) True G86884
TU108454 lncRNA downstream 284545 21516033 ~ 21516243 (+) True G86892
AMCG00021556 mRNA upstream 35250 21192962 ~ 21194602 (+) True AMCG00021556
AMCG00021555 mRNA upstream 37095 21180802 ~ 21192757 (+) True AMCG00021555
AMCG00021551 mRNA upstream 64352 21158733 ~ 21165500 (+) True AMCG00021551
AMCG00021550 mRNA upstream 120853 21098502 ~ 21108999 (+) False AMCG00021550
AMCG00021547 mRNA upstream 149167 21077945 ~ 21080685 (+) True AMCG00021547
AMCG00021560 mRNA downstream 23411 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021563 mRNA downstream 37715 21269203 ~ 21291092 (+) True AMCG00021563
AMCG00021565 mRNA downstream 128680 21360168 ~ 21361602 (+) True AMCG00021565
AMCG00021566 mRNA downstream 342562 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021567 mRNA downstream 426054 21657542 ~ 21659873 (+) True AMCG00021567
TU108371 other upstream 64820 21158624 ~ 21165032 (+) False AMCG00021551
TU108360 other upstream 120484 21098419 ~ 21109368 (+) True AMCG00021550
TU108358 other upstream 120484 21098592 ~ 21109368 (+) False AMCG00021550
TU108198 other upstream 561925 20667470 ~ 20667927 (+) True G86688
TU108100 other upstream 828603 20398926 ~ 20401249 (+) True G86601
TU108421 other downstream 3582 21235070 ~ 21236080 (+) True G86861
TU109135 other downstream 2943021 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 4045288 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4920580 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 7546827 28778315 ~ 28778733 (+) True G88238

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU271207 True 1415 TUCP 0.59 2 NW_025048098.1 103798 ~ 106059 (+)