RNA id: AMCG00021562


Basic Information

Item Value
RNA id AMCG00021562
length 1464
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00021562
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21207696 ~ 21227807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCACGATGCTCAGACCTCTCTCAGGTGAAGAGAAGgtggaaaataattgtaattgagGGAAACATGCGGAAAGCAGTGGGTTTGAGTCTCTTGCTGTTGGCGCTTACTTCAGATGTAGCCAATGGCCAGGGCCGCAGGAGGAAGGGCCAGAAGGCAAGCAACCTCATGCTGAAAGATGAAGGGAAAGAAGCAACCTGTTCATTTGACATGGCCTTCATCTTGGACAGCTCTGAGAGTGCCAAGAACGTCCTGTTTCAAAAGCAGAAGGACTTCGTCAAGAGGTTCAGCGAGAGGATCATGCAGATGCAGATGCCTTCGGGATGGAAGTTAAAAATCCGCCTGGCCGCCCTGCAGTACAGCAGCACCGTCAACATCGACCACAACTTCAGGGACTGGCAGGACGTGGACGTCTTCCAGAGCCGGGTGAGCGCCATGGCTTACATCGGGCACGGCACGTACTCATCCTACGCCATCACCAACGCCACGCAGCTCTTCAACGAGGAGACAGAGCCCAAGCACGTGAGGGTGGCGGTCCTCATGAGCGACGGAGTGGACCACCCCAGGAACCCGGACATCATGGGGGCGGCGGTGGAGGCCAAGAGCAGCAACATAAAGCTGTTCGTTATCGGGCTGTCGGACCTGGCCAGGGAGAGCGTCAACAATGCCAAGCTGCGGTCGATCGCCAGCGCCCCGGCCCAGCAGTACGTGCACAGCCTGACCGACCAGTTACTGGAGGAGAAGCTGTTCCGAGAGCTGaGCGTTATTGCTAATGAAGGAGGGAAGAAGGGGGACCCGGGGTTTGACGGGGCACCTGGTGAAAAGGGGATGAGGgGACCAGCGGGGACAAACGGCCTGCCCGGAAATGACGGCATTGAGGGTGAGAGGGGCGAGTGCGGCGCTCCGGGACTCAAGGGAGACAGAGGACTGGACGGGCCAGTGGGACTAAGAGGACCCAGGGGAGAGCAGCTCCCATATTGTCCTGGTACAAAGGGCAAGCTCTGTTCCGGCTTCTCGTCTATTGCCAATGTGACCTCAAACACATTCCTCTCTTCGCAGGGTGTGTCCGGACCACCTGGGGAGCAAGGACCAGAGGGCAACCCTGGACCCAAAGGGGACCGTGGGCCACCTGGAGCGTCGGGCCCCCCAGGGGACATTGGAATTGGCTTTCCTGGTTCAAAGGGGGTCAAAGGTAACCAGGGGAGGCCGGGCCCTGTGGGACCTGTGGGCATCGGAGAACCTGGGCTGCCAGACCACAAGGCATCCAGGGGAACCAAGGACCTCAAGGAGAAGGATTTCCAGGAGCAAAGgggGACCGTGGGTATGAAGGACCCAGGGGCGGCCGCGGGGAACCAAGGACCCATAGGCCCTCCTGGCCCCAGAGGGACCCCTGGGATTGGACTGGCTGGCCCCAAGGTAAATCGCCGCCTGCCCGTGTACAGACGAATGGTGTGCTTGCTTTAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108401 lncRNA downstream 16764 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 18858 21186768 ~ 21188838 (-) True G86849
TU108398 lncRNA downstream 23378 21175706 ~ 21184318 (-) True G86848
TU108259 lncRNA downstream 353402 20825630 ~ 20854294 (-) False G86739
TU108442 lncRNA upstream 63566 21291373 ~ 21293903 (-) True G86881
TU108455 lncRNA upstream 288225 21516032 ~ 21516234 (-) True G86893
TU108475 lncRNA upstream 438595 21666402 ~ 21671315 (-) True AMCG00021569
TU108491 lncRNA upstream 557069 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 902999 22130806 ~ 22188140 (-) True G86997
AMCG00021557 mRNA downstream 1751 21195595 ~ 21205945 (-) True AMCG00021557
AMCG00021554 mRNA downstream 32346 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021553 mRNA downstream 67013 21109754 ~ 21140683 (-) True AMCG00021553
AMCG00021552 mRNA downstream 113174 21086875 ~ 21094522 (-) True AMCG00021552
AMCG00021548 mRNA downstream 169271 21034863 ~ 21038425 (-) True AMCG00021548
AMCG00021559 mRNA upstream 5124 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021558 mRNA upstream 11267 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021564 mRNA upstream 67790 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021569 mRNA upstream 441121 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021568 mRNA upstream 446484 21674291 ~ 21761907 (-) True AMCG00021568
TU108350 other downstream 124126 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 482816 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 809913 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 847441 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 872392 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1927380 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2110444 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4175843 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4677637 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4863447 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile