RNA id: AMCG00021564


Basic Information

Item Value
RNA id AMCG00021564
length 3638
RNA type mRNA
GC content 0.48
exon number 14
gene id AMCG00021564
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21295597 ~ 21310899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCATCTCAAAACTGCCGCTTTCGTGCCGCAGAGCCGCCCTGGCTGTGTGCTCTCGGGCTGTTTGCTCAGCCCAGGTGCGGCCCGGGTCCCTCCCAGGGTAAAGCCACGGCGCGCCGCGTCACGATGACGTCAGCAGCCATTCAGCACCGCTGCGCTGGCGGAGAGTCGCCGCATCACCTGCAGCTCCGCGGCGCAGCAATGGACGAGCAGGCCGGCTAGCAGCGCCTACAGGACGCGTCTCCGGGGCTCATACTCGCTCTCCGGTCTGGAGAAAAACGATGGACAATATGGACAGACGCAATTTtgGATATTCCCGGGAATATTACGACCGCTACCTCCAAAGCCAAGACACGTCTGTCGTAAATAAGTTTCAGCAGAAATACTGGAAGACCAAGCAGACGCTCATTAAAGTCACGGGCAAGAAGGAGGATGAGCACGTTGTTGCCTCCGACGCTGATCTTGACGCCAAGCTGGAGGTGTTTCATTCAATACAAAGGACCTGTATGGAGCTTCTGAAAGTCATTGAGCAGTATCAGAGGAGGATTTGCTTTTTATCGCAGGAAGAAAACGAACTGGGAAGATTTCTGAGGTCACAGGGGACACAAGACAAAACTCGAGCCGGGAAGATCATGCAGGCCACGGGGAAGGCCCTGTGTTTCTCTTCCCAGCAGAGGCTGTCTCTGCGTAACCCGCTGTGCCGCCTGTATCAGGAGGTGGAGACGTTCAGGTACAGGGCCATCTCCGACACCTGGCTGACGGTGAACAGGATGGAGCAGAGCCGCACCGAGTACCGGGGGGCGCTGCTGTGGATGAAGGACGTCTCCCAGGAACTGGATCCTGACACTTCCAAGCAGATGGAGAAATTCAGGAAGGTCCAAGCTCAGGTCCGTCTCTCCAAAACCAGCTTTGACAAACTGAAGAACGACGTGTGCCAGAAAGTGGATCTCCTCGGCGCCAGTCGCTGCAACCTGCTGTCTCACGTGCTCACAACCTACCAGACCACACTACTTCACTTCTGGGAAAAGACGTCTCACACCATGGCGGCCATCCACGAAAGTTTCAAGGGCTACCAGCCGTATGACTTCACCACACTGAAGAACTTGCAGGGGCCCGTGAACAAACTGCTGGAGACGGGGGCCAAGAAGAAGAGCAAACGGAAAATGAAAGGCAAGAAAGATGATTCTGAGACGATGGCTGACACAGATGACAAACTCATTTCATTAGATGATGAAAATCACAACGAAGAGACTTATGATGCAGCTCAGAAGATCCATGGCACCGATCTGTTACCCGGCTTTGAAGAGATTAATTTAAgtggaaaaagaaatacagcccCACTGGACCTGCTCTCTGACCCGCGGGAGCCGGACGTTGGGGAGCGCGACGACATGGCCCTGCTGAGCGAGATCCTGAGCGGCTCCTGTTTGCAGGAGGGCGACTTCGGCCGGGAGTGGCAGGCCGCCTTCGGGGAGGAAGAGTGCGTGGGGGTGGCGGGCCCGACCGGCGCCGGAGACCCAGCGCAAGAGGACTCAGCCTCTGGGTTCCTGCCCTCGCAGCTCCTGGACCAGAACATGAACAATCTGCAGTCCTCATTCGCGGAGTGGGCCCTGAGCAACGCGGAGACGGCGGCCCAGACGGCCGAACGCGCGGCGGGAACCAATGAGAGTGAAAGCAAGCCGTCGGTGAGAGAAACCCCCAAACCGGCTAAAGACCTGTCGGCTTGGTTCAACCTGTTCGCAGACCTGGATCCGCTGTCGAACCCGGACGCGGTGGGCAGGACTGACCGAGAGCACGAGCTGCTCAACGCATGACCTCCTCTCTCGGTTCTTGCCATGTCCGTGTTTGCTGTAGGAGGGATGGAGGGTAAAACTCTATCTTTGATGTCATGTCACTTAAAAAAGTACCGCTCCTGCTGAAGATATAGAGGGTCTTATCATTTGTACACAGATAAAGGTCATTAGTCAAACCTGTTATGtcataaaatacatgttctgagggagggagagcagaTGCACAATTCTGAGTGTATTTCCAGTGCCAAATGAAACATCGTATCCAACTTCCTGTATTGCTTGGAAACTTTTGATGTGCCATCCAGGTGTTGCATCACTGATGACTGGACATCCACAAAAGCcattgtgtctttgttttggaGATCTGTAGAGAAAAGCACACTTCACCCCCCATCCCAAAACTGTTTCAGAGTTTCACCACCGAATATCAGAACAGGCAGAATCTGTTCTTCTCACCCTGTTGCCTGTATATTTGTCAAAAGACATGCATGCCCATATTCATAAATCTTTATCATCGTGTACAATTTAGcacctgttttttaaaagatgaaaaacaaccccccacaagcacaaacaaaaacgtaagcatttaatttgctttttaagtTTGGCGTTTGAAAGTTGTATGCGTCTCTTGGCCACTGCGTTGCCTTTTCATTCCTCATTGGGGTGTTGACGTGGCACGGCAGTCAAGCGTTTATGAATATAACCCCAGTTCTTccctaaaacaaatgtttgtctGCACTATTATACATTTCTTGTCTCTCGATACTGTTCCCCTGCTTTGCGTTGATGTAGGCCGGCTGTCGGCTCCCCTCGTGTGAGAGAAATTCAGTGCCGTTGACATCGATGATGGAGACGAGCGAGTGTGACATCACTGTCCGTCAGGCCTGGTCAGTTATATTGAGCTGCTGTTATAGTTTCTAAAGCAGCGCCTTCTTAAAGTTCAAACCTAATGTTCAGATAAGGATAAGGAAGTTATAGCTCCTTAGATCTCAAACTGACGGCAGGTTAGGTTTGTATGTGTGCATCTTAACTGCacactttctgtttttaattaatttatttcgtGTGCGTTTGTTAACACACATGCTAGTAGACTTGAATTCACAACGCAGAGCTGGGGGACGCGACGGGGAACCATTCTTTAAGACCCTAATTTACATGAGCTGAACTGACTGTATTGTAGATCTAGGAACTTTGTCTGTGGGTTTACTTTGAGGATATTCAGTATAAAGATCAAATGCACTTCATTAATAAAACTGCCCAATCTTCAAGACATTAAATCCACAATGTCCCACAACAGTGCCTACATGAACAACTAGTCTTTTTGGGTTTCAGACGTGAACAAGAGGTTGTGATAAATACCAAATCCTCCTGCATGTCCAAAAGCATGGattatagttttagttttttagctCGCATTGATACAGTAAGTTTGCTTTAGGctcattactttttttaacagtaaaatCAGAAGAAGTTTTAGAATAGTCTCGTGTACATTCACATTGATGTCAGCTTAACACCAACTGTCAATTAGCAGGTTTGTAATACTCGAAGGATGCATTTCGAGCCAATATTATTAAAGAGATGTGAATATGTGGATATACAGGATATACATATTAAgagtaataattatttaatcatgtcAACACTATgccaaaaatgcatttaatttctcctATACACCCATGTGATGGACATTTTCATCTGAAGCTGTATCATTCTTTAAATGAGTTTTGCCTGCCATTAAATGTatctttgattttaatttcttatggtttataatgtgtattaataactattttattaagtgtatattaaattaatatgatgCAGC

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K19863 ICA1; islet cell auto antigen 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108442 lncRNA downstream 1694 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 104665 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 106759 21186768 ~ 21188838 (-) True G86849
TU108398 lncRNA downstream 111279 21175706 ~ 21184318 (-) True G86848
TU108259 lncRNA downstream 441303 20825630 ~ 20854294 (-) False G86739
TU108455 lncRNA upstream 205133 21516032 ~ 21516234 (-) True G86893
TU108475 lncRNA upstream 355503 21666402 ~ 21671315 (-) True AMCG00021569
TU108491 lncRNA upstream 473977 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 819907 22130806 ~ 22188140 (-) True G86997
TU108699 lncRNA upstream 1317700 22628599 ~ 22628891 (-) True G87092
AMCG00021558 mRNA downstream 54506 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021559 mRNA downstream 58133 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021562 mRNA downstream 67790 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021557 mRNA downstream 89652 21195595 ~ 21205945 (-) True AMCG00021557
AMCG00021554 mRNA downstream 120247 21166581 ~ 21175350 (-) True AMCG00021554
AMCG00021569 mRNA upstream 358029 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021568 mRNA upstream 363392 21674291 ~ 21761907 (-) True AMCG00021568
AMCG00021572 mRNA upstream 525124 21836023 ~ 21855452 (-) True AMCG00021572
AMCG00021577 mRNA upstream 660390 21971289 ~ 21992069 (-) True AMCG00021577
AMCG00021576 mRNA upstream 690780 22001679 ~ 22012233 (-) True AMCG00021576
TU108350 other downstream 212027 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 570717 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 897814 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 935342 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 960293 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1844288 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 2027352 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 4092751 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4594545 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4780355 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile