RNA id: AMCG00021567



Basic Information


Item Value
RNA id AMCG00021567
length 1053
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00021567
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21657542 ~ 21659873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgatggcAAACTTACTTTTCCTTGTGATTATCAGCATAGtgTCCACAGCTGCTCATGGCCCAGTGTCCTCCATGTCCGTGGCAGTAGGagactctgtctctctgctctgtgatggagctgctgctgctggaatcCCTGAGGAGAAACTCTACATTCAGTGGAAGACGACCGGCGTCTACGAGTGTCTATATGAGGGTAAAGATCATGTCATGAAGTTCCTGGGAGATGTTCTTCTCACTGTTACAGCTTGTCAGGACTCCCTCAGCCTGTGGTCTGGAGCCGATCTGACCGTCCTTCACCATTCAAGCAATCCAGTGGAGGTGTtgtttgctgctgcaggagggggagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGTGTTCAGCCCTGGCCCCAGGTACGAGCACACAGTGTCAGTGCAGAACGGCTCTCTGACACTGCGCTCACTCACGGCAGCTGACCAGGGAAACTACACAGTGAGGGACACCAGCACCGACTGCATTATCagcactgtctctgtgtctgtggagGCTCACACCGCAAACCTCACTCTGCGGTCTGGagcctccctctccctccccctgaTCATTGCAGAGCCAGTGGaggtgctgtttgctgctgcaggagaggaagcctctgtctcagtgtgcgCTGTGGAGAGGGGCGCAGTGTTCAGCCCTCGTCCCGGGTACGAGCACAGAGTGTCAGTGCAGAGCGGCTCTCTGATGCTGTGCTCACTCACAGCAGCTGACCAGGGCCAGTACACAGTGAGGGACTCCAGAACTGACTGCACCATCAGCACCGTGTCTGTGAATGTCACAATCGCTGTCTCTGAGGAAGACTCTACAAACATAGCCATAGTTTCCATCTGCGTGATTCTTCCGTTGGCTGTACTGATTCTGTATGTTGCACGCAAAGCATGGCTCAAGAGAAAAAACCAGGgcagcctgctgctgctgctgctgctgctgatgaagaCACCACTGGGGTCCTACAGGGCCATAGGACCTACAGCTATTACCCAGCAATCAAGCTATTACAGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108467 lncRNA upstream 19026 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 141299 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 359762 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 400353 21241666 ~ 21257189 (+) True AMCG00021560
TU108425 lncRNA upstream 414525 21241666 ~ 21243017 (+) False AMCG00021560
TU108605 lncRNA downstream 611664 22271537 ~ 22281458 (+) True AMCG00021591
TU108617 lncRNA downstream 643693 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 927341 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 968747 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 1047026 22706899 ~ 22711120 (+) False AMCG00021602
AMCG00021566 mRNA upstream 52479 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021565 mRNA upstream 295940 21360168 ~ 21361602 (+) True AMCG00021565
AMCG00021563 mRNA upstream 366450 21269203 ~ 21291092 (+) True AMCG00021563
AMCG00021560 mRNA upstream 402347 21254899 ~ 21255195 (+) False AMCG00021560
AMCG00021561 mRNA upstream 424689 21230789 ~ 21232853 (+) False AMCG00021561
AMCG00021570 mRNA downstream 155097 21814970 ~ 21828220 (+) True AMCG00021570
AMCG00021571 mRNA downstream 172950 21832823 ~ 21834923 (+) True AMCG00021571
AMCG00021573 mRNA downstream 210780 21870653 ~ 21872068 (+) True AMCG00021573
AMCG00021574 mRNA downstream 218283 21878156 ~ 21897029 (+) True AMCG00021574
AMCG00021575 mRNA downstream 240023 21899896 ~ 21902053 (+) True AMCG00021575
TU108421 other upstream 421462 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 426054 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 426054 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 492510 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 548174 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 2514636 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 3616903 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4492195 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 7118442 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7401014 29060887 ~ 29065339 (+) True G88276

Expression Profile