RNA id: AMCG00021568


Basic Information

Item Value
RNA id AMCG00021568
length 4935
RNA type mRNA
GC content 0.59
exon number 27
gene id AMCG00021568
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21674291 ~ 21761907 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAAAGCCCAggatattgaaaagaaaaaagccagaGACCTCAAAGCCACCTATGAGTTTCCTGAGAGGTGGGCTCAGAAATCAAGGGCCAGAGTGCGTAAGAGCTTGATGCCAGACATGACACAGAACAGAAATCTTCTCCTGCTACCAACCTCGGGCCCTGGCTTGTGTCCTGTTGTGCTGATCTCCCAGCAGGTCAGGCAGCATCACAAGGACCTTGCTAATCAAATGCGTATTGAAGGGGTCGCTGAGATGAAGATGCCAGAGACAAACCTGGACCTACTCAAAACCTTCAGCGGCATCAATGTGCCCCAGTGTGAAAATCTGTGTGTGACAGATCTAGCAAAAGTGACCGACCTTGTTTCTCGTTCAACACCTGCTGATGCTCCATTCCTGTTCAATTGGCCGCCATCGAGCACTCCAACAAAGGAACTGGTTCAGACCAGTAGACTCGTGGGCTGTGGAGCAGTCCGTTCCATTGAGGGAGAGAGCAGTCAACGTGTCGACCTTGCTGGACCCTGGGGCAGATGTATGGGCAGTGAGTGCGGCCCAGGGGGCAGTCAGAGCAGGGCCGTGTGGTGCGCCCATATAGAAGGCTGGACCACATTACACACAAACTGCATACAGACCGAGAGGCCGGACAACCAGCAGAGCTGCTTCCGGGTCTGTGACTGGCACAAGGAGCTGTACGACTGGCAGCTGGGCGACTGGAACCAGTGCCTGCCAGTGGCGCTGAGGAACTCTGGATCGTACAAATCCCCCGTGTGCACGAAGGGGGAAGAGGGCATCCAAACCAGGGAGGTGGCCTGCGTCCTGAAGGCCAACGGCTCCCCCGCGCAGGACGTCATCTGCGAATATTTCGAACCCAAGCCCCGTCTGGAGCAGGCCTGCCTGATCCCCTGCCCCCAGGACTGCGTCGTCTCTGAGTTCTCCCCCTGGTCCTTGTGCTCCCGGAGCTGCGGCGAGGGTCTGCAGCACCGGCTCCGCAGCGTCCTGGCGCCGCCACTCTTCGGGGGCTCGACCTGCCAGAACCTGACCGAGTTCCAGTCCTGCCAGCTGGACCCCTGCGAGGCGGAGGAGAGCATGTACAGCCTGAAGGTGGGCCCCTGGAGCGCCTGCTCGCTCCCCCACTCCCGACAGGCCCGGCAGGCAGGGAAGCGCAGGAAGAACAAAGGCCGGGAAAAGGGCGTGAAGGACCCGGAGACCAGGGAGCTGATCAAGAAGAAGAGGAACCGCAACCGGCAGAACCGGCAGGAGAGCAAGTTCTGGGACCTGCAGGTGGGCTACCAGACGCGCCAGGTGGTCTGCACACACAAGAACGGGAAGCAGGCTGCCCTGAAtCTTTGCACACAAGAGAAGCTTCCCGTCACCTTCCAGTCCTGCATAATAACTAAAGATTGTGAGGTGACTGAGTGGTCTGAATGGGGCACCTGCTCCAAAGACTGCTACGACCTGAACTCTCCGAAAGGTGTCCGTGTCCGGACGAGAAGTGTGACCCAGTTCCCTGTGGGCGGGGGGGCAGAGTGTCTGGTCCTGGAAGAGCAGGAACCTTGTGCCCCCCAGGGGGACGGCATCCCGCCCTGCGCCTCGTATGGATGGAGGACAACTGAGTGGAGTGAGTGCCGGGTCGACACGTTACTGAGTCAGCAGGACCGCAGGCGGGGGAACCAGACTGGCCTCTGTGGGGGAGGGGTGCAGAACCGGGAGATTTACTGCGTCCAGGCTAATGAAGACCTGCTCTCCTACCTCAACACGCTCAAAGACAAGGAAGCATCCCGCCCTGTTGATAATAAACTGTGTGGGGGCCCGGTACCCAACACCACGCAGCTGTGCCACATCACCTGCCCTGTGGAGTGCGAAGTGTCGTCCTGGTCAGCATGGGGGCCGTGTACGTTTGAAAACTGCGAAGAccaaCTACGGAAAAGACGGATTATAAATGAGCCTACGGGAGGAACAGGAAACTGCCCTCATCTCACAGAGGCCATCCCTTGCGATGACCCCACGTGTTACGATTGGCAGCTGTCCAAGCTGGGCACGTGTGTCCCCGACAACGAGAACGAATGTGGACCTGGGACTCAAATCCCAGATGTGAAATGCATCAACGGTGACGGAGgggagatagacagacagatgtgcCGAGATGCCATCTACCCCACGCCCGTCGTCTGCGAGGTGCCTTGCCCAAAAGACTGCGTCCTCAGCCCCTGGTCCACATGGTCTTCCTGCTCCCACACCTGCTCAGGCAAAACCACAGAAGGCAAGCAGATGCGGGCGCGCTGCAACGACCACCCCTGCACCGTATACCACTGGCAGACCGGGACCTGGGGCCAGTGCATCGAGGACACGTCCGTCTCCACCATCAACTCCTCGTCCAGCTGGAGCGGAGAGCCCTCCTGCGCCGTAGGCATGCAGACCCGGAAGGTCATGTGCGTCCGGGTCAACGTGGGACAGGTGCCGCCCAAGAAatGTCCAGAGAGTCTTCGCCCCGAGGCCGTCAGACCTTGCCTACTGCCGTGCAAGAAGGACTGTATTGTCACTCCGTACAGCGACTGGACGCCCTGCCCCTCGACCTGCCAGCCAGGTGGTAATTCAAAAAAGAAACAGTCACGCTACAGGATTATTATCCAGTTACCGGCCAATGGGGGCCAGGACTGTCCTGAGGTTCTGTACGAAGAGAAAGAGTGTGAAGCCCCATCTATGTGTTTCGGCTACAGGTGGAAGACCCATAAGTGGCGGCGTTGTCAGCTAGTGCCGTGGTACGTGCGTCAGGACAGTCCTGGGGCCCACGAGACCTGCGGACCGGGCCTCCAGACCAGAGCCATATCATGCCGCAAGCAAGACGGAGGGCAAGCTGACATCGGCGACTGCCTCAAGTACGCCAGCACCATGCCCGGTATCACCCAGTCCTGCCAACTGCCCTGCCAGGACGACTGTCAGTTCACCAACTGGTCGAATAGCTCCTATTATAAGAGTAAACGCAACGTTCTACTTCTCTACATTGCAGGGAAAAGCAAGAAGAGGGACAAGTGCAAAAACACCCAAATATACCCCCTGAGTGAGACCCAGTACTGCCCCTGTGACAAGTACAATGCCCAGCCTGTGGGGAACTGGTCCGACTGCATCCTGCCAGAGGGGAAGGTGGAGGGGATCTTGGGAATGAGAGTCCAGGGGGACATTAAGGAGTGTGGCCAGGGGTACCGCTACCAGGCCATGGTCTGCTACGACCAGAACAGCCGGCTGGTGGAGACATCTCGCTGTAACAGCCACGGCTACATTGAGGAGGCCTGCATCATCCCTTGCCCTTCGGACTGTAAACTCAGCGAGTGGTCCAACTGGTCTCGCTGCAGTAAGTCGTGTGGGAGTGGCGTCAAGGTCCGGTCAAAATGGCTCCGTGAGAAACCGTACAACGGGGGACGGCCCTGCCCAAAACTCGACCACGTAAACCAGgTGTATGAGGTGGTGCCGTGCCTCAGTGACTGCGGTCAGTATGTGTGGGTCGCCGAACCCTGGAGCGTGTGGAAAGTGAGCGGCGTGGATCTGAAGGAGAACTGTGGAGAGGGAGTCCAAACAAGAAAAGTCAGGTGTATGCAGAACACTATCGATGGCCCCTCTGAGCCAGTGGAGGATTACCTCTGCGACCCCGAGGAGATGCCCCTGGGCGCCAGAGAGAGCAAGCTGCCGTGTCCTGAAGACTGTGTCCTCTCAGACTGGGGGTCCTGGAGTCGGTGTTTGCTGCCCTGCAATGGGAACAGCACGCGAGAGAGATCCGCCTTCCCCATCCGACTGGCCAGCGCGGGGAAGGACTGTCCCGTCTCCACAGAGAACGAGTCCTGCGCCCTGAACAAGAACTGCTTCCACTACACGTACAATATCACAGATTGGAGCACTTGTCAGCTGAGTGAGAAAGCTGTCTGCGGAAATGGGTACAAGACCAGGATGCTGGACTGCGTGCGGAGCGACGGCAAGTCTGTGGACCTCAAGTACTGCGAAGAGCTCAAGTTGGAGAAGAATCTGCAAATGAACACGTCCTGCGTCGTCGAGTGCCCCGTGAACTGCCAGCTGTCCGACTGGTCGTCCTGGTCCGAGTGCTCCCAGACCTGCGGACTGGTCGggaaAATGTGGAGAACCCGGGCTGTGATCCAGGGCTCCCAGGGGGACGGCCGGCCCTGTCCCTCACAGATGGAGCAGTGGAAGCCGTGTCCAGTCAAGCCCTGCTACAGATGGCAGTATAGCTGGTGGTCCGAGTGCCGAGTAGAGGACGCTCAGTGCGGGGATGGGCTGCGGTTCAGGAACATCTCGTGCTTCGTGTATGATGGGTCGCCGAAGGACCAGGGCAGCGTGGTGGACGAGGAGCTCTGCGGGGACCTGGAGCCATCTGTGGATGGAGACAAACTGATCATGCTGGAGGAGAGCTGCACGGTGCCCTGCCCAGGCGATTGCTATTTGACGGAGTGGACGGCCTGGAGTCCTTGCCAGCTCACCTGCGTCAACGGAGAGGACCTGGGCTTCGGGTCCGTGCAGGTCCGGTCCCGCGCTGTCATCCAGCAAGAGCAGGAGAACCAGCAGGAGTGTCCGGAGCAAGTGTGGGAGTCCCGGCCGTGCACCGAGGGGGAGTGCTATGAATATAAATGGATGACTGGCGCCTGGAGAGGATCGTCTCGCCTGGTGTGGTGCCAGCGTTCGGACGGATTAAACGTCACAGGTGGATGTCTCCTTGCCAGTCAGCCAGTGTCCGATAGGTCCTGTGACCCACCCTGCAATAAGCCTCAGTCCTATTGCACCGAGGTCGTCTATGAAGTatcagacacagagaggaacaCTGGGCACAATCATCACCTTTCCAATCGAGCAGAATTCAATTCTCAAGCTGATATCAAACATCGTTCTCCCGGCTGCCAGCTGGCTCCCGAGATTTCCCCCATTCTCCACTGA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0043534 blood vessel endothelial cell migration biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108475 lncRNA downstream 2976 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 158057 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 380388 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 483359 21189839 ~ 21190932 (-) True G86850
TU108400 lncRNA downstream 485453 21186768 ~ 21188838 (-) True G86849
TU108491 lncRNA upstream 22969 21784876 ~ 21785134 (-) True G86925
TU108574 lncRNA upstream 368899 22130806 ~ 22188140 (-) True G86997
TU108699 lncRNA upstream 866692 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 928701 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 1245487 23007394 ~ 23014782 (-) True G87181
AMCG00021569 mRNA downstream 4151 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021564 mRNA downstream 363392 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021558 mRNA downstream 433200 21239074 ~ 21241091 (-) True AMCG00021558
AMCG00021559 mRNA downstream 436827 21232931 ~ 21237464 (-) True AMCG00021559
AMCG00021562 mRNA downstream 446484 21207696 ~ 21227807 (-) True AMCG00021562
AMCG00021572 mRNA upstream 74116 21836023 ~ 21855452 (-) True AMCG00021572
AMCG00021577 mRNA upstream 209382 21971289 ~ 21992069 (-) True AMCG00021577
AMCG00021576 mRNA upstream 239772 22001679 ~ 22012233 (-) True AMCG00021576
AMCG00021580 mRNA upstream 259078 22020985 ~ 22026204 (-) True AMCG00021580
AMCG00021578 mRNA upstream 272953 22034860 ~ 22063539 (-) True AMCG00021578
TU108350 other downstream 590721 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 949411 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 1276508 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 1314036 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 1338987 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1393280 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 1576344 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 3641743 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 4143537 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4329347 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile