RNA id: AMCG00021573


Basic Information

Item Value
RNA id AMCG00021573
length 1272
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00021573
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21870653 ~ 21872068 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTGGGGACCAGCAGCAGCGAGGATAACGATGAATACCAGCTGGTGAAGCATGAGGTGCTCTGCTCCAAGAGAAACCTTTATGAAGTGCTGGAGTTCCTGGCCCAGGGTGTCTTTGGCCAGGTGGTGAAGTGCTGGAATCACCGTAACAACGAGATAGTGGCCATCAAAATCCTGAAGAGCAAACTCGCCTATGAGCAGCAGGGCCTGATCGAAGGCAGCATCCTGGCCAGGCTGAGCAGAGAGAGCCCTGACCAATACAACATCGTCCAGGCTTACGAATGCTTCAGGTACAAGGGCCCCTTGTGCCTGGTGTTCGAGATGCTGGATCAGAACCTGTATGACGTCCTCAGCTTCGGGCCCCTGCCCCTCAAGCACATCAGGCCCATCCTGGAGCAGGTCGCCACTGCCCTGATGAAGCTGGAGAGTTTGGGGATGATCCACACCGACCTCAAGCCCAACAACATTATGCTGGTGGACTTGGCCAGGCAGCCACTCCGAGTCAAGCTGATCGACTTCGGCCTGGCCATCCATGTCTCGGAGGCAGTGTGCTCTGACTGCGTGCAGGCCACATATTTCAGGGCTCCAGAGATCATCCTTTGCCTGCCCTACAATCAAGCCATCGATATGTGGTCGCTGGGCTGCATCATTGCGGAGCTGTTTCTGGGACTGAAGACGCCAGAGGAGCATGAGAGAGAAACGGGCATCCAGTCAAAGGAGCAGCGGCTGTACATGTCCAGTGGTTTTGATAACATGGCGCTGCTCCATATGCCAATGGATCTGGAAGGGAATGACTTATTGGCAGAATTGATAGACTGGCTGCAGTTCATCGACCTACTGAAGAGGATGCTGAAGATGGACCCAGATGACAGGATTACCCCCATCCAAGTCCAGAACCATCCATTTGTCACCTTGACTTTGGATGTGAGTTCCTCCCCAGCATATATGTCATGTCTTGTGCTCAGGACATGGAGGTCTGCTATAGTCGATTCAATACCAACACAGCCCCCAGTGAGACCTCCAACAGCCAGCTCCACGCTGCCCCCAACACGACCTCCAACACCCAGCTCAACGCTGCACCCAACCAGACACAGCAACTCGTGGCTGCAGAGGGGGACAAAGGGCACCGCGGACAGCCAGATATCATCACCCCCACCATCGTACAGGCACCGGCAGCAGACGCCCAACTCTACAACCGCCCAAGGCCGGGCACCATGGGCAGAGCTCGGCTCATTACGCGGGCCAGAAGAAACATCccacattatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108467 lncRNA upstream 232137 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 354410 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 572873 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 613464 21241666 ~ 21257189 (+) True AMCG00021560
TU108605 lncRNA downstream 399469 22271537 ~ 22281458 (+) True AMCG00021591
TU108617 lncRNA downstream 431498 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 715146 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 756552 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 834831 22706899 ~ 22711120 (+) False AMCG00021602
AMCG00021571 mRNA upstream 35730 21832823 ~ 21834923 (+) True AMCG00021571
AMCG00021570 mRNA upstream 42433 21814970 ~ 21828220 (+) True AMCG00021570
AMCG00021567 mRNA upstream 210780 21657542 ~ 21659873 (+) True AMCG00021567
AMCG00021566 mRNA upstream 265590 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021565 mRNA upstream 509051 21360168 ~ 21361602 (+) True AMCG00021565
AMCG00021574 mRNA downstream 6088 21878156 ~ 21897029 (+) True AMCG00021574
AMCG00021575 mRNA downstream 27828 21899896 ~ 21902053 (+) True AMCG00021575
AMCG00021585 mRNA downstream 363910 22235978 ~ 22237376 (+) True AMCG00021585
AMCG00021584 mRNA downstream 376183 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021591 mRNA downstream 398803 22270871 ~ 22291141 (+) False AMCG00021591
TU108421 other upstream 634573 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 639165 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 639165 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 705621 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 761285 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 2302441 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 3404708 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4280000 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6906247 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7188819 29060887 ~ 29065339 (+) True G88276

Expression Profile