RNA id: AMCG00021574


Basic Information

Item Value
RNA id AMCG00021574
length 3166
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00021574
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 21878156 ~ 21897029 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGACAAGTGCACTTGTGTTGCTCCCACGGTCAGCACCCTGAAGTTGGTCTGAGCTAAATTTAGACCCTCAGAAGTCAGAAGAACAGGCAGGTGAAGATGGTTCTCTATCACAAGGAGTTTGAGAAGGCAGGGAAGACAGGTGGTCTGCAGATCTGGAGGATTGAGAGCATAGAGTTGGCTCCAGTACCTGAAAATCTATATGGCAACTTCTACGTGGGGGATGCCTATCTGGTCCTCCACACTGTCAAACAGAAGGAGAATTATTTCTACGACTTGCACTTTTGGCTGGGGAAGGAGTGCAGCCAGGATGAAAGCACTGCCGCCGCCATCTTCACTGTGCAGATGGATGACTACCTGGGTGGGAAACCCGTGCAATACCGTGAGCTGCAGGGCTATGAGTCCACCGCCTTCACCAGCTACTTCAAGGGGGGAATCCAGTATAAGGCTGGTGGCGTGGCGTCAGGGTTTCACCATGTGGTCACCAATGACCTGTCGGCTCAGAGACTTCTGCACATCAAGGGCCGCCGGGTCGTCAGGGCCACAGAGGTGCCTCTCAGCTGGGCCAGTTTCAACAGAGGGGACTGTTTCATCCTGGACCTCGGCGCATTCGAGCGCCTGAAGGCTGCCCAGGTGACTGCTGGCATTCGTGACAATGAGAGGAACGGCCGGGCGCAGCTCATTGTGGTGGAAGAGGGAACTGAACCAGAGGAAATGAAAAAGGTGCTCGGACGCAAACCCAACCTCCCAGACGGAGACGATAATGATGACAACGTGGCGGACATCTCCAACAGGAAAATGGCCAAACTGTACATGGTGTCGGATGCCTCTGGGTCCATGCAAGTGTCGGTCGTGTCTGAGGAAAATCCATTCTCACAAGAACAGCTCCTGTCAGAGGAGTGCTTTATTTTGGACCATGGGAAAAGcagaattatttttgtgtggaaaGGCAAAAACGCAAACCCAGATGAAAGAAAGGAAGCAATGAAGACAGCAGAAGGATTCATTAAACAGATGGGATACCCTGCGAATACTCAGATCCAAGTCCTTCCAGAAGGTGGAGAGACTCCCATCTTCAAGCAGTTTTTCAAGAACTGGAGGGAAAAGAATCAAAGCGAAGGATTCGGAAATGTGTACGTCACAGAGAGGATCGCCAAGATTGAACAAGTGCCCTTCGATGCCTCCAAACTCCACGAGTCGCGTCACATGGCTGCTCAGTACAACATGGTGGACGATGGGAGGGGAACGACCGAGATATGGAGGGTCGAAAGCAATGGCAGGATCCCAGTTGACCCTAAAACATATGGGCAGTTCTACGGGGGAGACTGCTACATCATTCTGTATACGTACAAAAATGGGCAGATCATCTATACCTGGCAGGGATCCAGCGCAACACGAGACGAACTCACAGCGTCTGCTTTCCTCACCGTCCAGCTGGATCGCTCGCTCGGAGGACAAGCGGTTCAGGTCCGAGTGTCGCAAGGCAAGGAGCCGGCACACCTGTTGAGCCTGTTCAAAGACAAGCCCCTGATTGTGTATAAAAACGGGACGTCGAGGAAGGATGGACAGAAGCCCGCTCCGCCCACCCGCCTCTTCCAAGTGCGGAAAAATCTGGGAACCATCACAAGAATTTCTGAGGTGGAGGTCGATGCCCAGTGCCTGAACTCCAATGATGCCTACCTCCTGAAGCTCCCGAGAAACCATGGCTTCATCTGGATAGGCAAGGGGGCGAGTGACGAAGAGGAGAAGGGAGCCCACTACATTGCCGGAGAGCTGGGTTGTAAAGCAGGCAAGATTAAAGAAGGGGATGAACCAGAGGACTTCTGGACGGCTCTGGGGGGGAAGAAAGAGTACCAGACCTCAGAGCTCCTAGAAAGCAAGTCCCTCACCCGGCCTCCTCGCCTCTACGGCTGCTCTAACAAGACCGGCAGGTTCATCATTGAAGAGGTACCAGGGGAATTCACACAGGATGACTTGGCTGAAGATGATGTAATGCTGATGGATGTTTGGGATCAGATCTTTCTCTGGATTGGAAAAGATGCAAATGAGGTGGAGAGAACCGAGTCATTGAAATCAGCCAAGAATTACATCCAGACTGACCCTTCCGGACGGGACAAACGAACCCCGATAGTCATCGTGAAACAGGGCCACGAGCCGCCAACTTTCACTGGCTGGTTTATGGCGTGGGATGCCACCAAGTGGGAGAACGACTCGGTGACCCAAGCCATGACTTCCCTCAAAGTTGCATAAAAGCATgagacaacaacaagaacagacatcaagtcacacacacacacacacacacaaaatacacatctaATTTCCTGCTTTGCTAGAATTGCTGAAGTAAAGATAGAGTCgttttttggaaaatatttgtgCAATACGTATGGCATATATTTACTGCTGGAAAGAAaggtatatatttgtataagcCACAGTCACAGGACATGAAAGTAAAAATCAATtcagtattgtttatttatctatgtgTTACTGCACAGTTTCTCAAATGAAATGCCTGTACGCTTATTgctggaaaacacaaataaacctctgagaaaacaaatcaaatgctCGCTGTTTGAATCAGTTATTAGTGTTTtgctttaacaaaaatatatttccttttctttacaaaatataaaggtcaaacaaatgtgtgctaCATTTTTGTAaccaccagggggcacacagaCCCAAATCAAACCACAAACAGATCTAGTTGGACAAAATACAACATCCAGTTGTAGTAAGTTATACCTGCCatgtcttatttaaaaatacaaagaattacATAGAAAGTATCCCAGTAACATCTTGGCTTAATGTCACATTATTCCTTCTAGGCCATAATTGTCTTTAAGGCCACTTTTAAATATCACACTGTCGCTGTGCAAGCAGGGACAAAAGGCCAGCGCTGTGGCTGGAGATGGCTTGAAaaattaactttacattttaaggaaCGGGCACAGGTACTGTGTATATCACTGTTATATCATTACGCTTTTAAATAAAGGCACCTGCGATCAtatcatatacattttgtaatgttttatgacttgtactgaactgtatttttgaactcTGTATTACGCTtctattttgtaagtcgccctggataggGGCAtctaccaataaataaatacatacatacataaataataa

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K05768 GSN; gelsolin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108467 lncRNA upstream 239640 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 361913 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 580376 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 620967 21241666 ~ 21257189 (+) True AMCG00021560
TU108605 lncRNA downstream 374508 22271537 ~ 22281458 (+) True AMCG00021591
TU108617 lncRNA downstream 406537 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 690185 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 731591 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 809870 22706899 ~ 22711120 (+) False AMCG00021602
AMCG00021573 mRNA upstream 6088 21870653 ~ 21872068 (+) True AMCG00021573
AMCG00021571 mRNA upstream 43233 21832823 ~ 21834923 (+) True AMCG00021571
AMCG00021570 mRNA upstream 49936 21814970 ~ 21828220 (+) True AMCG00021570
AMCG00021567 mRNA upstream 218283 21657542 ~ 21659873 (+) True AMCG00021567
AMCG00021566 mRNA upstream 273093 21574050 ~ 21605063 (+) True AMCG00021566
AMCG00021575 mRNA downstream 2867 21899896 ~ 21902053 (+) True AMCG00021575
AMCG00021585 mRNA downstream 338949 22235978 ~ 22237376 (+) True AMCG00021585
AMCG00021584 mRNA downstream 351222 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021591 mRNA downstream 373842 22270871 ~ 22291141 (+) False AMCG00021591
AMCG00021590 mRNA downstream 396735 22293764 ~ 22301168 (+) True AMCG00021590
TU108421 other upstream 642076 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 646668 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 646668 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 713124 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 768788 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 2277480 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 3379747 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 4255039 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6881286 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 7163858 29060887 ~ 29065339 (+) True G88276

Expression Profile