RNA id: AMCG00021576


Basic Information

Item Value
RNA id AMCG00021576
length 2935
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00021576
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22001679 ~ 22012233 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCCTTCTGATCAGCTGTTTGAAGTGGTTGCACTAGAAGGAGCGATGGAGATGGGACAGATATACACAGGATTAAAAAGCGCAGGGAGAAGACTGGCTCAATGTTCTTCTGTTACCATTAGGACCACCAAATCTCTTCCAATGCAGATCGACGGGGAGCCCTGGATGCAAACACCTTGCACTATTAAAATCACCCACAAGAACCAGGCTCCGATGCTGATGGGCCCACCACCAGGCACCGGTTTCTTCTCCTCGTTCATCAGGAAAAGCCGAAGCCAGAGCAAGGAGTAGAGCTCTTTCTTCCATCCAGCCCATGATGCAAACTGTGGTGGTCTCTTACACTTGGAGCTCAAGCAAACTGTTTTGTACTTCTCTGCTTCAGTTCCCATTCAGAAGGCCAGGGGATTGTgatgttattttccatttttaaaccGTCCACATTTAGATAcggtgtatgtatttatgtgtgtgtttggacgtatggatggatgggtggatgtgagtatttatttatttatgtacgtACTTCAGTGtctcattgtttatttatgtttaaactgATGTTTGCATTCTTCTCCAGTataaaagaaactgaagaaTTTCCGTCTGATAGAGAGAAATGTTCCAAACCCAGGGAGCGGAAAGGAAATCATTTATGGTGGCGTTCTTGGACCGGCGCCACTGGTAGTTAATCATGGTGAATTAAGCTGTGCTGGTCAAAGTGCATTGAACCTGGCTTCTATTTGAGCAAAATCATCCATTGTGCGACGATTCCTTGGGCTTCATTTAGGCCGTGTTGATGTAGAATAAAATCACCTGCAGCGTTTTGAAGTGCAATTCCTTCCCTGCCTCTTAACCAAGCCTTTCTTAACTACATGGAGGTATGAGAACGATTCCCTCAGAACATTCCTTGCAGGCTGAAGGTCCTTTACTTTACTGAATGCATTCGCCTTCCCTGAGCTGCTCACAGCCACGTCTCTGCCATTGACACCGAACACATCCCCTCCTGTTGGTGACTCTGCATGATGAAGGAGTAGTGTGCTTGCTTTTCCATTGCAAGTTAAGCTTGCGCTGCTGAGTTTGCATTATCTGGGTTGAGGATTTTGTTAACgcacaaatgcatttattcttttTGCGGAGTCTGAGATAATTAACAGTGCATTCACAGGCAAACctatattaaatgcatatttttactAAGTTATTCAGTACATTCACCATTGATCCCCAACTGATAGAGTGATAGAAACTTTACCAAAACATGAtggtacatttgaaataaatcagtaaaacaaaccCCTTTCTCTGTCCACGTATGACTGTTGTATCTTGAATGTTGTACCACAAGCAGTGTGGTATTTCTTTTACTAATTTATGACTCTAGgcttgtttaaacaaaatatttatttcacttattattattttattttactatcatTACTACtaattatttcctttgtttacCAATTTAGCAAtttcaatccactgctggatgaaggcctatcctagatgtttccacctgtttttattgttttttcatgcaCACTGCTTTCATGCTCTCCTGACCACTGCCTTGGTCAATGCCCATCCAGCCGCTCATTTATTTTCAGCTTCATTGGGGTTTATTAGCCATATCTCACCTTGTTGGCCAGATGGATTTGTGAATCTGGTGATAAACATCTCTTGAATACAGTTTTATTTCCCCTTGCACATCCATCCAGTTACTTTCACCACACTGACGCATTGAAGTcagtttattatataaatatctgCAGAAAATGCTATACATTACACAGCACAGCCAGTTTAATCAGGACATGTCACCATTAATGTTTACCGATAAGCCCTGATGAATGGGGCTTTCCAGGCACACGACTGGCTGTTTATCAAGGTACCTTTCGCTCGCTGGAAGTCCCAGGCCTGTCCCCTGTTGTTTTACAGCATCTGCTTGGGCGTCTGTTCACACGAGTGCTCGTCTTGTTGTGTGGATTCCCCTCCGAAGctgtcacagacagacagcttaATTTAAAACGtctatttttcatttccttaaCTGGGATCTTAAAGTGTCAAATGTACTGACAGAGATGATCACTGGTGGGAACtaccaaaacaaacagaaaataatatgcaacaaaaaggttttcatgatacaacttttttgtgtttggtgCCATGAATGTAAATCAAAATTGATGACTATATTAACATTACAACACAGGTGTCACATAGTGGCAGGAGAGGTGATTTGTGAAgtcattattgtattatatggCACACCAATTCttatacagatttaaaacatgttcCAGCTTtctccattttgaaatattttaagtactttatattgtattttttacttgaaTGCATCTGCATGAAAATGTTGAGAAAGTAGTGTTTGTCTGGTCATTGCTTGACTTAATTATGGGCCTTGAAAAAGGTTTAGACAGGCATAACCAGGGGAAACATATCCCATttgtttaaacaatattttaatcgGTTGTGCTATTAAGactgtttttactttgtttactttaacatattttactTCGATGAATTGCCAAGGGTGAGATTTGCAAGATACATTAAAAAGGTAATCATTGATCTTTTCCCTGActgcattaaacattttttttggtaGAACCTTGTTATAAATGATGCTGTTCAATGCAAATGTTTATCAATTACTGTTTGAAGTTGAGCATTGCTTTGATGAGAATCGCAATGCACTAGCATGTTCTGTTTTCCACTGTCATCTCTGATTTGCACGGATTGTTATACATGATCTgttttaagtatatttatatatgtgtatcagtcagaatagttttatttatttgaagctttttgtaaattaaattgactGATGAGAAGATATTGCACATatgtattcgttttttttatAGAGATGTTAAACCTTATGATTTATGTGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108491 lncRNA downstream 216545 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 330364 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 485445 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 707776 21291373 ~ 21293903 (-) True G86881
TU108401 lncRNA downstream 810747 21189839 ~ 21190932 (-) True G86850
TU108574 lncRNA upstream 118573 22130806 ~ 22188140 (-) True G86997
TU108699 lncRNA upstream 616366 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 678375 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 995161 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 1063401 23075634 ~ 23076015 (-) True G87193
AMCG00021577 mRNA downstream 9610 21971289 ~ 21992069 (-) True AMCG00021577
AMCG00021572 mRNA downstream 146227 21836023 ~ 21855452 (-) True AMCG00021572
AMCG00021568 mRNA downstream 239772 21674291 ~ 21761907 (-) True AMCG00021568
AMCG00021569 mRNA downstream 331539 21668928 ~ 21670140 (-) False AMCG00021569
AMCG00021564 mRNA downstream 690780 21295597 ~ 21310899 (-) True AMCG00021564
AMCG00021580 mRNA upstream 8752 22020985 ~ 22026204 (-) True AMCG00021580
AMCG00021578 mRNA upstream 22627 22034860 ~ 22063539 (-) True AMCG00021578
AMCG00021579 mRNA upstream 51311 22063544 ~ 22066573 (-) True AMCG00021579
AMCG00021583 mRNA upstream 94774 22107007 ~ 22114674 (-) True AMCG00021583
AMCG00021582 mRNA upstream 115244 22127477 ~ 22132117 (-) True AMCG00021582
TU108350 other downstream 918109 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1276799 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 1603896 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 1641424 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 1666375 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 1142954 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 1326018 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 3391417 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3893211 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 4079021 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile