RNA id: AMCG00021585



Basic Information


Item Value
RNA id AMCG00021585
length 234
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00021585
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22235978 ~ 22237376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGCGAAAAGATAAGGGAAGTTTGCTGCTTGAGACATAACTACCGATTGACTGAACTGTACCTCCACAATAATGACATCACCAGCATTACAGGTTGTTTGAGACATCTGACATCCTTGCAGGTTCTGTTGCTTCACAACAACCAACTGAAGAAGCTTGGAGAGTCTGTCTCTGAGCTCCGAAGAATGCATTTCCTGAGGACTCTTAGTAAGAACTTCAAATTACCGTGCTAA

Function


GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108467 lncRNA upstream 597462 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 719735 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 938198 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 978789 21241666 ~ 21257189 (+) True AMCG00021560
TU108605 lncRNA downstream 34161 22271537 ~ 22281458 (+) True AMCG00021591
TU108617 lncRNA downstream 66190 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 349838 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 391244 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 469523 22706899 ~ 22711120 (+) False AMCG00021602
AMCG00021575 mRNA upstream 333925 21899896 ~ 21902053 (+) True AMCG00021575
AMCG00021574 mRNA upstream 338949 21878156 ~ 21897029 (+) True AMCG00021574
AMCG00021573 mRNA upstream 363910 21870653 ~ 21872068 (+) True AMCG00021573
AMCG00021571 mRNA upstream 401055 21832823 ~ 21834923 (+) True AMCG00021571
AMCG00021570 mRNA upstream 407758 21814970 ~ 21828220 (+) True AMCG00021570
AMCG00021584 mRNA downstream 10875 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021591 mRNA downstream 33495 22270871 ~ 22291141 (+) False AMCG00021591
AMCG00021590 mRNA downstream 56388 22293764 ~ 22301168 (+) True AMCG00021590
AMCG00021593 mRNA downstream 142874 22380250 ~ 22390591 (+) True AMCG00021593
AMCG00021595 mRNA downstream 266769 22504145 ~ 22526873 (+) True AMCG00021595
TU108421 other upstream 999898 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1004490 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1004490 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1070946 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1126610 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1937133 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 3039400 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3914692 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6540939 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 6823511 29060887 ~ 29065339 (+) True G88276

Expression Profile