RNA id: AMCG00021590


Basic Information

Item Value
RNA id AMCG00021590
length 2752
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00021590
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22293764 ~ 22301168 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCTCGGTGCTCTGCCTCGAGTCGGCGGCTCAGTGCCAGTGCAGGCGTGAGGACGGCCGGCGTGCATGCAGTAGGCTGAGCATCTGGAAAGATTACTGTAATCAAGACAGTGAGTTAATTGATTGCACGGGCGTGTGGGATCGACAGATCAGCGACCATGGTGTGCGGCGGGTTCACCTGCTCGAAGAACTCCCTCTGCGCCCTCAACATCCTGTACGTGATGGTGAGCTTACTGATGATTGGGATTGCGGCCTGGGGGAAGTGGTTTGGCCTGGTCTCAAGTTTCCAGGTGGTTGGAGGAGTCATAGGAGTCGGGATCTTTCTCTTCTTTGTGGCCCTTGTTGGTTTGATTGGTGCCATGAAACATCAtcaagtgttgttgttttttTACATGATCATTCTCTTCATGGTGTTCGTGGTTCAGTTTTCAGTGTCTTGCGCTTGCCTTGCACTTAATAAAGAACAGCAGGATCACCTCTTAGAAGTAGGGTGGAACAATTCTCAAATCACACAAATGGATGTCGAAAAAAGTCTGAATTGCTGTGGGTTTTCAACTTTCAACAATAACCAGACCTGTTCTGCTCtctgctttcaaaacaattccTGCCCGACTTGTGCATCTAAAATCCAGGAGCATGCAGGCGAGGTGCTGAGATTCGTTGGGGGGATCGGCCTGTTCTTCAGTTTCACTGAGattttgggAGTGTGGCTCACATATAGGTACAGGAATCAGAAGGATCCGCGAGCAAACCCGAGCgcttttctgtgatttaaaaaagattGCTTGCGAAAAAGAATGCACTACgtgattttaaagacatttggATATTTTCAGTATCTCAACGAATTAACTCTGTAAAGGGACATGATCTCCTTTTCCCCCCTGGATCGGGCTATTTTTACCTTCACCATCATATGGAGACTTGACCGGTCCTTGctggaaaaatatgaaatctgcTGAATATTTGTGAACACACTGCTGTCCAGTACTCTACTGTCTTATTGTGTTCTTTGGGGCCGATTGCATGACATTATATTAGACTATTCTAATGCAAGTTAGTTGCACAAAAATGAAGACTAAGACTTATGCTAaaaagttagcctcctcaccTCTGGGCTATCTTAGAATTAAAGTCTATATTTCCATTAAAACTGCTTGCCTGAGAATACAGCGACACTGTCAATGATGTTGATGGGCGGAGCCTCCCATTGGCTTACACACACTCCGCCCACCGACAGTCCCCCAGACAGAAACTCCTCCCCAAAGAGTTCAATTACCAATCCTGGGGTCCGTTTCAGTTCTGAGGGCAGTCCTCCTCCAGTACGCgaatgtttcctcttaaatatttattttagcagattattttattgtttctgctTGTCTGTTACGGACCGCACACGCAGCTGGTTGACTCTGTTAacttgtgtttgagtgtgttaaatttccccccaaaatatatttttctgcattgtaTTCCAGTAACATGCACAGATTTTCAGTGAACTGGGATCCTTGCTGTTTTAGAGAAACATCTaccatattttttctttttttttcttcaagtgtcttaaaattcccagaatgccttGAGTGATTGACTAAGACCAGTCTAGAAggactgttttatgcaacagtTTTAACTGAGTGTCGATCGTTAATATGACTTTGTTTATGCAACCAGCCCCTGGATCTTTATTCCTATGTACATCCTTTTTCATGAGTTTCAGTATTCCTGATGATGATGGTGTGAAATGCAGGAtgttgtctctgtgtctctccaaagaaagctgtattttattgatgAGTCTGCAAATACTCTTCTACATCTAGACATATTTATTACttgaatgtataatttgttcAGAATGCGGTGTTGTGATTTCAACTTAAGCATAAAACAGCCCACTAGGGCAAATAATTGATtcataattgattttaatatgtatgttttatcttGCTGTTTGGctaatataatgcataatgtgACCACTACAATGAAGGCAGAAGTATAATGATTTGCATGTTGGCTTTAAAGGTCTGCCAGTATAGAGAATACTAAGTAATTGTCGATGTGCAATAATAAATGAAGGAAAACTACGTGCTATTTAAATGAAGTGACTACATTGAGAAGAACTTTAAACACATGAAAGCTGTTTTGTTAGCTGATGCTGAACTAACAGATCtgttttttctatatttacattttcagatatatacatacacacacacaaacaggctatatattcaaaaagcaaaaatatcaCGTTCGGTGTGGCAAGTCTTAATTTATACcttgaatacaaatgttttgtgGGTTTTTTACAGCTCTTTCTATTGCTCAGTGTTTTTCGTTACAGTCAGTGCTGTGTAAATATGGCAACGGTAAATTGTATGTGAAGTGCTTTTGCAGGTGCATACATTACAGTAATCACCCTTCtcaaaaataatttgaacaacGGTAGTATTAAGAAGTATATGGTTCCGTAAATGAAGACATATCTGTACATTTGGATCTGTGTTTATACTTGATTTCGAAACCCTTTGTAATATCCTCAGTATTTTTACTTCTAGATTTTGATCTGTAACTGCAGGGTGCATATGTCACCTTTTAACACCTAGTCTAAGACTGAATGTGTGCTTGACTCTCTTTATGCATGACCTCTACGAAGTGTGTGTTAGACTAAAGGATTCTGTGAATGCTGTCTCTGTGATTGAGCATTTGTAAACCTAATAAAATTATTTGATACGTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108605 lncRNA upstream 12306 22271537 ~ 22281458 (+) True AMCG00021591
TU108467 lncRNA upstream 655248 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 777521 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 995984 21295531 ~ 21297780 (+) True G86884
TU108424 lncRNA upstream 1036575 21241666 ~ 21257189 (+) True AMCG00021560
TU108617 lncRNA downstream 2398 22303566 ~ 22306888 (+) True G87030
TU108691 lncRNA downstream 286046 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 327452 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 405731 22706899 ~ 22711120 (+) False AMCG00021602
TU108800 lncRNA downstream 706226 23007394 ~ 23014831 (+) True G87168
AMCG00021591 mRNA upstream 2623 22270871 ~ 22291141 (+) False AMCG00021591
AMCG00021584 mRNA upstream 28574 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021585 mRNA upstream 56388 22235978 ~ 22237376 (+) True AMCG00021585
AMCG00021575 mRNA upstream 391711 21899896 ~ 21902053 (+) True AMCG00021575
AMCG00021574 mRNA upstream 396735 21878156 ~ 21897029 (+) True AMCG00021574
AMCG00021593 mRNA downstream 79082 22380250 ~ 22390591 (+) True AMCG00021593
AMCG00021595 mRNA downstream 202977 22504145 ~ 22526873 (+) True AMCG00021595
AMCG00021596 mRNA downstream 239754 22540922 ~ 22575847 (+) True AMCG00021596
AMCG00021602 mRNA downstream 395996 22697164 ~ 22711144 (+) True AMCG00021602
AMCG00021604 mRNA downstream 531867 22833035 ~ 22839518 (+) True AMCG00021604
TU108421 other upstream 1057684 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1062276 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1062276 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1128732 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1184396 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1873341 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2975608 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3850900 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6477147 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 6759719 29060887 ~ 29065339 (+) True G88276

Expression Profile