RNA id: AMCG00021594


Basic Information

Item Value
RNA id AMCG00021594
length 5238
RNA type mRNA
GC content 0.46
exon number 26
gene id AMCG00021594
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22414264 ~ 22436882 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATCTGCAGTCCCAGCTTATCAGTATCCACATGACAGGAGCAGTGATCGGCGCTGCCAGTCCTTCCATATGGGGATGGGGAGGCCTTGGTGTTGTGCTTTTTCTTATCACGTTTGGACCTTttgccatattttattttgcattttctatCCTCTGTTTTGTTGGTGGAGGTTTTGCAGTTACTcttttatttggaaaaacaaactcGGAAAAATACCTTGAAAAGTGTGAACACTCCTTTCTTCCTACACCACAATCCGGTATACCTAAGAGAAATGTCACTTTATTTGAAAAGACACTGGAGGAGATGAAACAAGAAGCTAAGCTGATCAAGATTGACCGAAGACTGACAGGTTCCAACATTATTGACGAACCACTACAGCAGGTAATCCAGTTTGCCCTTCGAGACTACATCCAATACTGATCGAAAGAAGTGGACTGGCAGCCGTACTTCACAACAAGACTAGTAGACGATTTTGCGACTCACCTGCGGGTTTTTAGAAAAGCTCAAGAGAGACTGACGGAGAAGGAGGACCCCAAGCAACGTAAGGGAGATGCCCCCGAGGAGCTCATAGACTCCTTCTTTGAAGCCGAAGTAGAAATGGAGAGGAAGATCTGTAGAGACCTCGTGTGCACAGCGCCGAAAGACGAAGAAGGGTTTTTGCGAGACCTGTGTGAAGTTCTGCTGTACCTCTTACTACCTCCTGGAGACTTCCATAACAAAAACATGAGATACTTTGTCAGGGAGATACTTGCCAGGGGGGTCCTCCTTCCCTTGATCGACCAGCTGAGCGATCCGGACTACATTAATCAGTATGTTATATGGATGATACGCGATTCCAGTTGCAACTACGAAGCCTTCATGAACATCCTCAAGCTGACGGACAAGGTGCCGGAGCTCGAAGCTGTGAAAGACAAAGCCCTGGAGGAGCTGCAGTATCTCCGGTCCTTAGACACGGCAGGAGACGATATTAATGTGATTAAGAATCAGATCAATAGTCTATTGTTTGTGAAGAAAGTATGTGAAACGAGAATACAGAGGCTGCAATCAGGAAAGGAAGTCGACACTCTCAAACTCGCAGCCAACTTCGGCAAGCTGTGCATAATCCCTCTAGAGCACATCTTAGTGCACAACATCGCACTGCAGTTTTTCATGGATTACATGCAGCAGACCGGGGGGCAGGCCGACCTGTTCTTCTGGCTGACGGTGGAAGGGTACCGGGTCACAGCgcagcagcagctggaggtCCTGCAGAGCTGGCAGAAGGACGGCAAGAAGCAGAGCAACCAGACCAAGGGCTTGCTGAAGGCGGCGGCGCTCGGGGTTTATGAGCAATACTTATCAGAAAAGGCTTCCCCGCGGGTTCAGGTGGACGAGCATTTGGTGGCGAGTTTAGCCGAGAAGCTCAACAAAGAGGATCCGACGCCGGAAATCTTCGACGATATTCAGAGGAAGGTGTACGACATGATGTTGCGAGACGAGCGCTTCTACCCGTCCTTCAGGCAGCACCCCCTGTACGTGAGGATGCTGGCGGAGCTGGACATGCTGAAGGAGCCCAGTTTCAAGGGCTCGGACGATGGAGACGGAGAATCTTTTAATGGATCTCCAACTGGAAGCATAAATTTGTCCCTAGATGACCTCTCCAATGCAAGTTCAGACGAATCCCTGCAGTTTCACGCTTACATCTCTGACACTGGCGTGTGCAATGACCACGGGAAGACCTACGCCTTGTACGCCATCACAGTGTTTCGCAAGAACCCCGACGGCAGCGAAGACACCTGGAAGACCTACCGGCGCTACAGCGACTTCCACGACTTCCACATGCGCATCACCGAGCAGTTTGAAAACCTCACAAGCATTTTAAGGCTGCCTGGGAAAAAGACGTTCAATAACATGGACAGGGAATTcttggaaaaaaggaaaaaggaccTGAATTCCTACCTACAGttgttgttgaACCCTGAGATGATGAAGGCCTGCCCCACTCTCGCTCCTTACGTCTATGACTTCCTGGAGAACAAAGCCTACAACAAAGGCAAGGGAGATTTTGCACGCAAGATGGACACCTTTGTCAATCCCCTGCGCAGCTCCATGAGGAATGTGTCCAACGTGGTCAAAGCCATCCCGGACAGCCTGGCCGAGGGGATGAACAAAATGTCCGATAACATGGGGAAGATGTCCGAGAGGCTGGGGCAGGATCTGAAGCAGTCCATTTTTAAGGCGAGTCATTTTTTAtggatatttGTCCCTCCGCTGATCCAGAAGTCGGACATCGACCCCGAGCACTGCCGTGTCTCCGCACAGCTGGATGACAATGCAAGTAGCCCTGGACGCCGTGTGGACGACAACATCCCCCTGCGCGTCATGCTGCTCCTGATGGACGAGGTGTTTGACCTGAAGGAGAGAAACCAGTGGCTGCGGAGGAACATCAAGAACCTCCTGCAGCAGCTTATCCGCGCTACGTACGGAGACACGATCAACCGgaAAATTGTGGATCACGTGGACCTCATGACATCTCCAGAGCAAGTTGCCGATTATGTCAAGAGATTCAGAGATGCATTCTGGCCCAATGGGATTCTAGCGGAGACGCCCCCTCGCCGGGACAAGTCGATCCGAATGCGAACCAGAGTGGCGGCCAAGACCAGCCTGCTGGGGATCATGCCAGACGAGCTGAAGCACATCATCGGGGCGGACACGGCTCGCAAGGGCATCCTGCGGGTCTTCGACATGTTTCAGCACCAGCAGCTCAACCGCCGGCTGGTCTACGTCTTCCTGGAGGGCTTCCTCGAGACCATGTTCCCTCAGTACAAGTTCCCCGAGCTGTTCGTCAAGCTGCACTCGCGCTCTGAGCGCATGCAGAGATACTCGCAGAAGCTCAAGACGGCGCCAGTCCCGCCGCTGCAGAAGAGGTGACACTCCGGGACCCCTGGAGCCGGACGGACGCTACGGCGGAGCATCCCTGGACTCGAGGAACGCAGGCTCCCCCCCCAGGCCCCGTGTGGACGAGCTCGTAGCACTGACGATTTGTTTATTATCGTTATGCAACACGCAGAAGTGCCAGGCCTCAACCATCGGGGAGCCGCAGATGTGTCGGCAGGGGGGCCCCGGAGTCGTGGATGTCCTCCTCCGCTTCTTTTAAACTCGACACCTCTTTTGAAAAGTGGGAGACGGCGTACCCCTGGAAAATCCCTCTGTAGCAAATCAGCAGCTTGCCTCCAGGTAAAGCACAAAGATATGATTTTCTAACACGCTTACGTTTAACACACAAACGAAGGTTAATAAACActaatctattttaaaaagaaaaaagatggcACGGTGTGAGAGATGAGAAACGGAGAGTGCCGGGTATCGCGTTCGAGCGGTTTAAGCGGTTATGGGCCAAGCCGGTATGGTTTTGCACGATATTCTCACTGCTTCACAAGATGTCCGTGgggaaaatcaataaataaagtggGTTTCTATaaacttattttcttctgttccttatccagtggctttttttttttagattgtttttaaagagattGTTATCTGTCTACTGCCATGAAAACCGCagagttgtattattttttttacgtGCACTCAATTCTTCGTCCTGTTTTCTTAATCCCGCTCTCAGAGATCATCGTTACCAAATAAATACGACGCCTTTGGAAGAGACTGACCTTCCACCCGGTTGACCGTTCCATATCCAATCTGCGTAGAGCAGGGGGGACCTGTATTATACATCCGCTGATATGGCAGGTTTCTGTCTGTATGACGCCCAAAGCAAACCACCTGCTCCTGTGTATATTGACTTTCCCGTGGTGATATACGAATAAATAAACGAATACTGAAACGCTTAATAGCACTTATCCTAAAGCAAGCTAAATTAACACACTTCTCCAAAGGTGGCTGTGAAACATGTTGAATGTCTGTAATGGACACAGGTGAGCCTCACGTGTTTGTTTTATAAGCATATCCCGATATGCTGTGAAGAATGTAACACTTTCTGATGTACTATGTGTTTGTATCCGTTTTTAACCCTGTGAAATCGTTCCATAATCGTGCGGGTCTCATGATGTGATTGTAGGATACCTGTCGGGCACTTAAACGCAGGGACTGCCCTTGAGTCCAGATGACTGTGCCACTATACTAGAATTCAGCCTTAATCTTAACAAGTGAAGACCAAGAGACCTTTGATCATCCCACTAGAGTGACCGGAAACGCATCTGTAAAATCATTGGATTGGAAAAAAAACGCCAAATCAAAGGATCTATTCTTTCTAGAAGTCTGTAATTGTgtgcaatatttttcttttcttgcatgtgtattttaattgtgtattaaacattttactgttttgACATGTAAAAAACGAAAAGAGAAAAAGCTAAACGAGTCTTTGAAATCCAACAACTTACATTCCGTTGTTGTCATGATGATACTTTATTTAAAGACTTGTTTTATAAGTCTCGATTTTCACTCCTCGTAAAAATTCACTTATCAATAATGAACTTTGTTAATCTGAGCATGGCTTATGTACAACAGAGGGAATCTTAAGAGCACATTGCAAGCTATATCGAtatcagttttttaaatatgtatgtatgtatatatatatgtgtgtgtgcatacatacatatatatatatatgtatgtatatatatatgtgtatatatatgtatatgtgtgtatatatatgtatacatatatgtgtgtatatatgtatatatatatgtgtgtgtgtgtgtttatttgtgtatatgtatgcgtgtgtgtatgtatgtttgcatatatatatatgtatgtatgtataatctCCACACAACGTATGTGTTGAAAAGTCCTGCATCATGGGTCCAGTCGGCGAATCTCTACTAGAAGGGAGTTGTCGTCCACTCCTCCGGGTCACATGACAGGCGGCCTCTCATTCTCCGCTCTGCCTGTCCTGTGATGCAGGGTTTggttgtgattttctttttttttttttttattgccctgtatatataaatccaGTCTAATGAATTGTGCATATCATTGTACAGTATGTGTCAACAGTGTGCCTAATTGTACTGTCAAttctattttcttatttttctttaatgaacAAAAGTCAATCAGAATGTCGTGGTCATTTGTAATCGACTGAACAAGGACTCTAAGAGGTATAGAGTGTGTGCATTATGCTAATACAATGTCCAATAGAGCAGCTGGAAACAATATTACACTAATAAAATGTTAACGCTAGCA

Function

GO: NA

KEGG:

id description
K17925 SNX13; sorting nexin-13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108574 lncRNA downstream 226124 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 629130 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 742949 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 898030 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 1120361 21291373 ~ 21293903 (-) True G86881
TU108699 lncRNA upstream 191717 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 253726 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 570512 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 638752 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 652720 23089602 ~ 23091111 (-) True G87203
AMCG00021592 mRNA downstream 107837 22303644 ~ 22306427 (-) True AMCG00021592
AMCG00021588 mRNA downstream 167462 22242229 ~ 22246802 (-) True AMCG00021588
AMCG00021589 mRNA downstream 172576 22240700 ~ 22241688 (-) True AMCG00021589
AMCG00021586 mRNA downstream 183080 22228224 ~ 22231184 (-) True AMCG00021586
AMCG00021587 mRNA downstream 187522 22201102 ~ 22226742 (-) True AMCG00021587
AMCG00021600 mRNA upstream 150451 22587333 ~ 22588802 (-) True AMCG00021600
AMCG00021601 mRNA upstream 158748 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021598 mRNA upstream 197822 22634704 ~ 22638390 (-) True AMCG00021598
AMCG00021599 mRNA upstream 207510 22644392 ~ 22649062 (-) True AMCG00021599
AMCG00021597 mRNA upstream 236661 22673543 ~ 22682139 (-) True AMCG00021597
TU108350 other downstream 1330694 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1689384 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2016481 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2054009 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2078960 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 718305 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 901369 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2966768 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3468562 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3654372 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028569 True 3072 mRNA 0.50 26 NC_007130.7 2064794 ~ 2115040 (-)