RNA id: AMCG00021595


Basic Information

Item Value
RNA id AMCG00021595
length 3523
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00021595
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22504145 ~ 22526873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGATGGTTTTCCCTCCTTCCCCTCCTTAGACAAGCATTTACAGTTGTCTTCTGAGCCAGAGGTAGCTCTCCGGCTCCGGCtctggctccggctccggctccggctccggctccatCACCCGTCTCGCGCGTACGACAACAGGCCTGCGACATCTGCTCCCAGGTCTAACTCTCCTTCTGGCTCTTCCGCAGTGGAGATCAAACCCGAGGTCCCTGGAGGGCTGGAGTCGGTCACACCTCTGGACCTCCGCACAGACTTACGGATGATGGTGCCAGTGGCGGACCCCACACTGTGGGAgaagcagctgcagcaggaacTGCTCCTGATCCAGAAACAGCAGCAAATTCAGAAACAGCTCCTGATCACTGAGTTTCAGAAGCAGCACGACAATCTGACACGGCAGCACCAGGCCCAGCTGCAGGAGCACCTCAAGTTACAACAGGAGCTTCTTGCCATTAAACAGCAGCAGGAGATCTTGGAGAAAGAGCGAAAGCTGGAGCTGCAGTCGCAGGAGCAGGAGCTCGAGAGACATCGCCGGGAGCAGCAGTTCCTCATGCTGAGGAATAAGGACCGGACCAGAGAAAGTGCAGTGGCCAGCACAGAAGTGAAACAGAAACTCCAAGAGTTTTTATTAAGTAAATCGGCCACCAAAGATCCCGCGGTGAATGGGATCAGCCACGCCCTCAGCCGCCACCCGAAGCTCTGGTACACGGCTGCCCATCACACGTCGCTGGATCACAGTTCACCTCCGCTCGGTGGGACGTCACCCACCTACAAATACACCCTGCCCACTGCCACGGACGCCAAGGACGACTTTCCACTGAGGAAAACCGctTCCGAACCCAACCTGAAAGTGCGTTCGAGATTAAAACAGAAAGTAGCCGAGAGACGAAGCAGTCCCTTGCTAAGAAGAAAAGATGGAAATGTAATCAATGCATACAAGAAAAGGACATATGAACTGACAGACTCCACCGCCAGTAACAGCGCTCCGGGCTCTGGTCCCAGCTCTCCAAACAGCGGATCCACCGCTATAGGAGCCGAGAATGGGCCATCCTCCCTCCCTACTACAGCTCAAACTGAGCGTCTGCTCTCACATCAAAGGGTCTTGAAACCTGAAGAATCGATGACCTTGCTTAGTCTCTACACATCCCCTTCATTACCCAATATTACCTTGGGACTTCCAGCTGTGTCCTCACCAATTAATGTGATGCGCCAGGCCCTGCCCGGACAGTACTTGGGTGGGTCGCCACTACAGCCAGGCCTCCCCCCGGTTGCCCTGGAGGCTAAAGTGAACAACAGCCACCAAGCGCTGCTGCAGCACTTATTACTGAAGGAACAAATGCGACAGCAGAGGATACTCACGTCTGGTCCGGCCGCCGTCCCTGTCCTGCCGCAGTCTCCCCTGGCGATGAAGGACCGGCCCGCCTCCAGCATGCTCTCCAAGTCCATCGAGCAGCTCCGGCAGCCCAGCAGCCACCTGGAGGAGACAGAAGAGGAGAACCACCGAGAGCAGCCCATGCAGGAGGACAGAGCGCCCCCGTGTGGCACGAGCAGGAactgtagcagcagcagcaacagcagcagctcgGAGGGAGATTTCCCCGGGGCTCACCTAGGCGTTATTAAAGTGAAAGAGGAGCCACCGGACAGCGACGAGGAAAGCCTTAGCAGTCAAAGCGAGGGCAAGGAGCAGACTGCATTTATGCAACAGGTAAAGGGGAAAGATTTTGCTCGCAGGTTGGTCATTAGAGCTATTatttgaatacacacacacacgcacacacacactcgaaCGTGCGCCCGATCCTCAATCCCGGGCACGAAGAAAAATGACGTCATTCGAGTCAGTTCTTAAGCCCCGCCCCCTGTCCGTCAGAAAACACACGgcaaatctttttcttttcccctttgCTAAATGGAAACCATCGCCTGAACCGTGCCTACTAAAAACTGTCTGGGTGTCCATGAGGCGATGAGGTCGCTTGATTTTGCTTGTGAATTTGTGAAGTGATCTTTGTACAACCTTGTTCTCAatgttttgtatataatgtgacgAGAAGAGAACCTCCCAGATACCATTGTTTTTCCCCCcgttttctaattttatttttggcgAGGAACGGTCTACCGTTTTCTCTGCCGTTGTTTAACACATCTGACCTGCTTTTGTCCACGTAGTCACGTCAAGGATCTTTGACACAGAGAGCGAACGCTATTCTACATGTGTACTTCATCCACTTTATATTTTTAGagagtttcttattttttatttatttctgtgggaAGCGTATCGCTACGTgtataaaaagaaaggaaaaaaagttcCGCAGTCTACAGAAGTACCAGACTGTTCACAACCACCCTTTTTGTCCAAGCCTGAACAATatgagacatttatttttgaacttgTATTGCAAAGATGTGAATCATTACATGTGAATGATCACggagtctttttattttttggtttctgtttatttatttttgtgtgacaCATCATGTGGTCGTTTTAACACAAGGGAGAAATGCACATGTGCAGAACAAATCGATGCACACTAGTTGTGCGCCGAGAAAGTGGCATTGCCGAAGCCAACGCAGGACAAACAGACACTTTAATATGAGATAATGTTGAACTGCAATCGGAAAACTGGTCTCTCTGCTATCTTTCTGTGGTTAAATCAAGTCTTTGTCAGGTCCCTGCTAGGATCCAGCGGAGAAGTTACTCTGTAAGGCTTGACAGGAAATGCCTTTTGGAAGCAAGAAGTCCAAATGATTCATGTGCTGAGGAATGTAGGAAAAGGCTAGTATTTTACTCTGAGAGTTTGAAAGGGCAGTCTGTGAATTGATTTATTGTCAGAGAAAATAACAAAGTGAGCAGGGAAATGGTTAAGGAAGCTTTTCACTGAAACATTTCCTTCATATTCCCTCATGATGTGTTTACCTTTTATTGTAGGCTTCAAGTTGTTAAAAAGACTACATCCCTCTTTGTTTGCCTACTTTTGtgacaaaggaagaaaaaaaaacataaaaacttaTCAGAAGTAATTGAAAGCTGCATAGTTTTAAATGGCATCCACCTCCATTTCAGCATGCGCTACACAAGACGGGGTCTACACACTTAAATTCTAACAGTCgtgttctgtgtatttgtgttctaTTTTCTTGTCGTTTTGTTTGACTTTGTATTGTCATTGTAAGACACCTAAATGGGGGATTGTGTCTCCGGTGGATCTGTGAACGACCTACACATCTGAGCTTTATAGTTTCTTAGTGGACAGGGTAGTTAATGCATCGGGTCATCTCAGCGCTAGATTGCTTGAAATCAAAAATCACCAGACAAACAAATTGTCAGTCTTGTTCACCTACTCCTTTAATTTTGTTGTAAGGGGATTCATCTGCACCACCGGTGGAGAGACcctgttttatgttgttatttactgtttgtatttgttcccTATTTTGCCTTCTGTTAcaactttctcttttttttaaataaagttcatTCCCTTTCTTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108617 lncRNA upstream 197257 22303566 ~ 22306888 (+) True G87030
TU108605 lncRNA upstream 222687 22271537 ~ 22281458 (+) True AMCG00021591
TU108467 lncRNA upstream 865629 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 987902 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 1206365 21295531 ~ 21297780 (+) True G86884
TU108691 lncRNA downstream 60341 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 101747 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 180026 22706899 ~ 22711120 (+) False AMCG00021602
TU108800 lncRNA downstream 480521 23007394 ~ 23014831 (+) True G87168
TU108852 lncRNA downstream 618131 23145004 ~ 23146510 (+) False G87215
AMCG00021593 mRNA upstream 113554 22380250 ~ 22390591 (+) True AMCG00021593
AMCG00021590 mRNA upstream 202977 22293764 ~ 22301168 (+) True AMCG00021590
AMCG00021591 mRNA upstream 213004 22270871 ~ 22291141 (+) False AMCG00021591
AMCG00021584 mRNA upstream 238955 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021585 mRNA upstream 266769 22235978 ~ 22237376 (+) True AMCG00021585
AMCG00021596 mRNA downstream 14049 22540922 ~ 22575847 (+) True AMCG00021596
AMCG00021602 mRNA downstream 170291 22697164 ~ 22711144 (+) True AMCG00021602
AMCG00021604 mRNA downstream 306162 22833035 ~ 22839518 (+) True AMCG00021604
AMCG00021605 mRNA downstream 315919 22842792 ~ 22900445 (+) True AMCG00021605
AMCG00021606 mRNA downstream 374431 22901304 ~ 22901525 (+) True AMCG00021606
TU108421 other upstream 1268065 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1272657 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1272657 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1339113 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1394777 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1647636 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2749903 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3625195 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6251442 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 6534014 29060887 ~ 29065339 (+) True G88276

Expression Profile