RNA id: AMCG00021596


Basic Information

Item Value
RNA id AMCG00021596
length 1524
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00021596
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22540922 ~ 22575847 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGACACGCTGGAGCCCAAACAGAGACATACGTCTGCTTGGACATCCAGAAAGCGCTAATCTTTGAAcagcagcatcaacGTGTCCACCAGCTCCGGCTGTACCAGGCTCAGACAGCAACAGTTGGCATGGCGGGATTAGACAAACAGCAGCCCGCTTCCAGAACCCAGCCGCCCCCCGCCGGCGCGCCGTTACTGCCCCCGTCACTAGATCACACGGCCGGGCACACCATCCCCACTGGAGTCGCGTACGACGCCGTGATGCTGAAACACCAGTGTACGTGTGGTAACTATTCTGACCATCCTGAGCACGGAGGACGGATACAGAGCATCTGGTCCAGACTGCAGGAGTCTGGCCTCATCAGCCAGTGTGAGCACGTTAGGGGTCGCAAAGCCAGCCTTGAGGAGCTGCAGCTGGTTCACATGGAGCATCATTCATTGCTGTATGGCACCAGCCCGATCCACCGGCAGAAACTAGACACCAAGAAACTCCTGGGTTCATCACCTCAGAAGAATTTCACTGTGATGCCCTGTGGAGGACTGGGGGTGGACAGTGACACCATTTGGAATGAGCTGCACTCGCCCAGCGCGGCACGCATGGCCGTTGGCTGTGTCATCGAACTGGCTTCCAAAGTGGCCTCAAGAGAGCTGAAGAATGGATTTGCTATTGTTCGGCCCCCAGGCCACCATGCAGAGGAATCCACAGCCATGGGATTCTGCTTCTTTAATTCGATTGCAATCACTGCCAAGCACTTGAGGCAAAAGTTTAATATCAACCGGATTTTAATCGTTGACTGgGATGTTCACCATGGCAACGGAACACAGCAGGCCTTCTTTAGTGACCCTCACGTCCTCTACGTTTCCCTCCATCGCTACGATGAAGGGAATTTCTTCCCGGGCAGCGGAGCCCCTGATGAGTGTGGAAGTGGCGCTGGCGAAGGCTACAATGTCAATATTGCCTGGACAGGTGGCCTGGACCCACCCATGGGAGATGTCGAATACCTCATGGCTTTCAGGACTGTTATCCTCCCCATTGCCAACGAGTTTAATCCAGATGTGGTGCTGGTGTCAGCTGGGTTTGATGCCGTAGAGGGTCACGACCCCCCATTGGGCTTTGGTCAACTAACCAAGCAATTGATGAGGCTGGCAAGTGGACGCGTGGTCCTGGCGTTGGAAGGTGGACACGATCTTAGCGCCATCTGCGATGCGTCAGAGGCCTGCGTGAACGCCCTGCTGGGAAATGAGCTGGAATCTCTCCCCGAGAAAGTGCTTCATGCCAAACCAAACGCCAATGCTGTGTCTTCTATCGAAAAGACGATTGAGATCCAgaGTAAGTACTGGAAATCAGTTCAGAAGTATTCTTCAGTCGTGAACATCTCTCTTGCGGAGGCGCAGAAGcatgagagagaggagacggACGCTGTCACGGCGATGTCTTTACTGTCGGTTGACGTACACCAGTCGTGCAAAGCACAGGAGAGCAGaacCGCGGCCGAGCCAATGGAAGAGGAGCCAGCGCTGTGA

Function

GO: NA

KEGG:

id description
K11407 HDAC6; histone deacetylase 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108617 lncRNA upstream 234034 22303566 ~ 22306888 (+) True G87030
TU108605 lncRNA upstream 259464 22271537 ~ 22281458 (+) True AMCG00021591
TU108467 lncRNA upstream 902406 21638276 ~ 21638516 (+) True G86905
TU108454 lncRNA upstream 1024679 21516033 ~ 21516243 (+) True G86892
TU108445 lncRNA upstream 1243142 21295531 ~ 21297780 (+) True G86884
TU108691 lncRNA downstream 11367 22587214 ~ 22588925 (+) True G87086
TU108698 lncRNA downstream 52773 22628620 ~ 22628886 (+) True G87091
TU108724 lncRNA downstream 131052 22706899 ~ 22711120 (+) False AMCG00021602
TU108800 lncRNA downstream 431547 23007394 ~ 23014831 (+) True G87168
TU108852 lncRNA downstream 569157 23145004 ~ 23146510 (+) False G87215
AMCG00021595 mRNA upstream 14049 22504145 ~ 22526873 (+) True AMCG00021595
AMCG00021593 mRNA upstream 150331 22380250 ~ 22390591 (+) True AMCG00021593
AMCG00021590 mRNA upstream 239754 22293764 ~ 22301168 (+) True AMCG00021590
AMCG00021591 mRNA upstream 249781 22270871 ~ 22291141 (+) False AMCG00021591
AMCG00021584 mRNA upstream 275732 22248251 ~ 22265190 (+) True AMCG00021584
AMCG00021602 mRNA downstream 121317 22697164 ~ 22711144 (+) True AMCG00021602
AMCG00021604 mRNA downstream 257188 22833035 ~ 22839518 (+) True AMCG00021604
AMCG00021605 mRNA downstream 266945 22842792 ~ 22900445 (+) True AMCG00021605
AMCG00021606 mRNA downstream 325457 22901304 ~ 22901525 (+) True AMCG00021606
AMCG00021617 mRNA downstream 424642 23000489 ~ 23003768 (+) True AMCG00021617
TU108421 other upstream 1304842 21235070 ~ 21236080 (+) True G86861
TU108414 other upstream 1309434 21229852 ~ 21231488 (+) True AMCG00021561
TU108415 other upstream 1309434 21229852 ~ 21231488 (+) False AMCG00021561
TU108371 other upstream 1375890 21158624 ~ 21165032 (+) False AMCG00021551
TU108358 other upstream 1431554 21098592 ~ 21109368 (+) False AMCG00021550
TU109135 other downstream 1598662 24174509 ~ 24177990 (+) True AMCG00021656
TU109403 other downstream 2700929 25276776 ~ 25365977 (+) False AMCG00021682
TU109668 other downstream 3576221 26152068 ~ 26197076 (+) False AMCG00021703
TU110128 other downstream 6202468 28778315 ~ 28778733 (+) True G88238
TU110172 other downstream 6485040 29060887 ~ 29065339 (+) True G88276

Expression Profile