RNA id: AMCG00021597


Basic Information

Item Value
RNA id AMCG00021597
length 4270
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00021597
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22673543 ~ 22682139 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACAGCAACGAGTGGCTGGACTAGGAGTCCCAGGGTGCTCGTCTGAGACAGCCGAGCTGCAAGGTGTTTCTGCGGCTACCTGACACTCCCTGCTGATTTAAAGTCACAGCTATAGCATGGTAGTGCTGTATCAACTGGGAACATTCCCAAAGAACAGTATTTAACTGGGAATTAGTCTGTGGAGATGGTGTAGAGATGTCAGCTGCTAGAGCACATTCATTTCGCAGTGGAAGTCTCGCTCGGAGTAAATCAGAGGGGATGCTGATTGACCTGGGTGATGATGGACccttgaacaacaacaacaacaacaattttaaAGgcAGTTTTGCTGCAGCTAATATAACAAACTATACAGAATGGCCCATTTTACAACCAGAGCTTCAGCCCTCGGCCAAAACCACAAACCCCTTCTGGAACGGTCTCTCTGGGTCGAATCCCTTCCTGGACGACATTGAATGTCAGAGATCAAAGGCCAATGTATCCAAATTGAAAGAGGACCCAATTGCTATCTTCGGTGACGACAATGCAGACTCTGTCAGCAACTCCTCCGATGAGATGAACGCCGatcacattttgaatttgacaAGGAAGAGTGTGAAAAAAGCGGGCAGGTGGAACAGCGCGTCTGATATCCTGGACATTTTAGATGGGAAACAACCCCCCGGACAGAGCAGCGCAGCTCCTTCCAGTCAGTTCCTGAAACCCGATTTCGAGTGGCTTAAGAATGACAGGGAAGCCTACAAGATGGCCTGGTTGAGTCACCGGCAGTTGACTAGATCCTGCCTTGATTTGGGGATCATGAGTCAGAGCCCCGGCTGGGCCCAGACTCAAGCAACAGAGACACAGATTGTCTGTAAAGTAGACCACCGTGGGGGATCTGTACAGTTGCCCGATTCTGACATCAGTGCCCATATTCCTGAAGGCCATGTAGCCGAAGGAGAAATGCAGGAGATTGCACTGAAAGCGATGCTCGACCCACCGCAAGGACTGAACAATGACCTCTCCACGACGGTCAGCCCTCTTCTGGAAGTGAGTCTCAGCAACCCGAACACACACCAGTGCATTTCGCTGGAAATGAAGATCGCTGGCGAGATCAAGAATGATCCCCTCAGCCAGGTTATGTCCGATATTGTATGTTTGCGTGGTCACAAAAAAAACGGACCTTTCGAAAAGATAAAGAACTGTTACATTTATAAGGACATGTTACAAGTGAAACTGGAAGATATCAAGTCTCAAGTTTATATCATTGCAGCAGCTCAAGCCCTGGTGCTTCAGCCGCCAGCTTCCTCCATCTGGGACTACGTTGAGAGACGTATGACGGTCGGACTTTATGGCCCAAAGCATATccacccctctttcaaagtggTGTGTGCAATTTTCTGTCATAATCAAATCCCACAAAAGCTTGCATTTTCAGATGCCAAAAAAGCGAACAAGAACTTGCCCCCAGTTGTGCTGCAACTTTGGGGGCAACATCAGTTCAGCCTGAAGTGGCTGCAGAAtctccagattgtgatgacctCAAGTGAGTCCATATTTGAGGTCGAAGCCATGGATCAAATGAAAGAGGTAAAGCAAGTACTTCTTAAAATGGGAAGAGTCATCCGTCTGccatttgcattgtttaaaacCCGACCAGGAGAAATGGGCCCCTTTAAAGTACAAGTTCAAGTCAAGGATTTGAATCGGGCAGTTCTGGCCGAGATCAGCGTGTTGACCCCAGGGGCTCCCCTGCGGCTCTCGGAGAGGTTGGGACAGAGACGGCTCGAAAAACGGAAAGAGCTGGCCTGTTCCGCTGACGTTCCCGAAACGACAATGCCGCAACCCCCCAAGTTCCAGGATCGGCCCATGGACGTGAGGCGCTATGGGGTGGCGTTAAAATCCGTCCTCCGGCAGCCAAAGGTCGAGTACCTGTTGGAGTATTTCAAAGGAGATACCATTGCGATCCTCTCTCTGGAGACGGTGAAGTCCATGGGACTGAGCAAAGTGAAGGAATGGTACATCGGCTTCCTCCGAGGGAAGGTGGGTCTCGTTCACTGCAAGAACGTCAAGGTCATCGGCAAAGAGCAAGTGATAGACTTCTCTGGGTTGAGGGTCACTACCCAAGGGCTCCTCGATCAGCTTCTGCTGCCCTATAAGAAGCTCACGTACATTTACTCTGCGATCCAGACGCTGGTCACGGAGAACATTCCTAGTTGGAAGGACTTCGCCGAGGCCCTTGGCTACTCCAGCTTGTTGATAGAGGATATGGCCAGAGTCCGGGCGCAGACGGAAACCGAGAAAGTTGCCTGTGTCCTTGAGAAGCTGAAAGAAGACTGCCATTCGGATAAAAGCAGGAAGAAATTCCAACATGAGCTCATAGCTGGGCTTCTGAAGATTGATTGTCAAGGCCTTGTTGCGCAGCTCACTCAAAACACAGTCCTTCTCTCCACTGCAGTAGAGCTGGGCATTAGATGGAGGGAACTGGCTGAGCGAATGGGCAAGCTCTCGAGCGCTCAGATAGCTGGCTATGAGGCTCCCCACCGAGGGAAGAGTGGAGAAGTCGGCCTTCAGTCCATGTGGAAACCTGCGTATGACTTCCTGTACACGTGGAGCGCGAGTTATGGAGACGCCTACAGAGACGTGTTGCAGGACCTCCACCTGGCCCTGGACAAAATGAAGAACCCGGTGACTAGGCAGTGGAGACATCTGACCGGAGCGCTCATTTTGGTGAGCTGCATGGACATACTTCGGGCTGCCGCCTTCCCAGTAGCAGCACAGTAGTAGAGGGTTTACCATGTCTGTACAGTGTGGACgtgtttgttacatttttagcTTCATTCACAGCTCGATTTTGACTTTTTTCAAATACCTTTTACTTCGGAAAATAATTTTCAGAAATCATTttggtctgtgtgtttttatatttttgttaaccTGAgagataaatacatgaaaaagagttctgtttttgttcactGTGCTTGTGTAAATGCACtggttatttaatgttttgctaATACCTATACATTTGACTAAATAGGCATCTAAACAACGGACATCGttaaatttaactttaaaaaaacaaaactctggAAATGATTATAATGGAAGTtataacaaaattgaaaaaataaaggcttaagaataaaacataagGAGCATCTTATAAGATTATCTCACGAGATATTCACCGTTACAAAGTAATGCTATCCCAAGAAAATCTATGTTTTCCGTGGCTACTAGGTCATTGCATATTTTCTGCCCCCTATCTGTTACACACATTGGTTTCTAGTTTTCCAGTAGTAGTCCTATTGTACACAACTTTAATAAGCATTCAAAAATATCCTACAATTGTAtaacttttgtttcttttcctgtaTTCTGAAATGTGATCCTGCCATTGTAGTTAAAGAGATAATGAAGGGTCATACTTTTTAaaccagatttgttttgttttgtaagcgTCTCAATGGGTCCCTGTCTCCGTAGCTTCATGCTTTTATATGCATGTAACTGAAATATCTGAACAAGTCTACAGTTGGGAGATGTATCTTAGTCTTAATATATTAATCTCCCATTGTATTTGATGCtaataaaatatgctttattGGGCGAATTGCGGACTATCTTTAAAGATAATTTGACATGTTTCTTATCAgccaataaatcaaatattttagaaGTAAAAAAATTGGGATTGTAAACTTTGTCAACAAAACTCTGAGATATCGTTCTGTAGTGTGTTACAGtccacagagaggcatcacaggGAATAACAAACCAGAGACTAATAATCTCATAGCTGTATTGGTAAATTATCTGTATGACAAATGTAATGTCAAGGTTATTAAATTGTAGTATTACAATGTAGTAAAGCAATTTCACCCACATTGTCCCTCATAAATTTGAATGCGGTGACTTTCTTTACTGTGATATGGcaactgtaaaagctgatgtattttgtatgatgCATTCAAAGAAGATTCAGAGAATTGTCTGTCCAGTGTACTGTACCCATAAGGTGACTTCAGTATTTTAGAAAGTAGTAGTTCACCGATTGCCtttagtgatttttttaaaacaatgtgctgCTGAAACCATCCTTTAGAGATAACCGCTGTGAAGAGTTGTGTAAGTGTGGAGTCCTGTCAAAAGTATaccttttaaacaaatacaaaaaacaggtCATTGtagctgtatatacatgtattaatagATTAGTCAATGAACTGTGTAATGTcaaaacaattgcatttataaaataaatgacttgaCTAACGGTTTTAC

Function

GO: NA

KEGG:

id description
K23702 MACC1; metastasis-associated in colon cancer protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108699 lncRNA downstream 44652 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 485403 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 888409 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 1002228 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 1157309 21516032 ~ 21516234 (-) True G86893
TU108737 lncRNA upstream 8469 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 325255 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 393495 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 407463 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 411449 23093588 ~ 23106188 (-) True G87218
AMCG00021599 mRNA downstream 24481 22644392 ~ 22649062 (-) True AMCG00021599
AMCG00021598 mRNA downstream 35153 22634704 ~ 22638390 (-) True AMCG00021598
AMCG00021601 mRNA downstream 77434 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021600 mRNA downstream 84741 22587333 ~ 22588802 (-) True AMCG00021600
AMCG00021594 mRNA downstream 236661 22414264 ~ 22436882 (-) True AMCG00021594
AMCG00021603 mRNA upstream 40800 22722939 ~ 22724339 (-) True AMCG00021603
AMCG00021607 mRNA upstream 219446 22901585 ~ 22907039 (-) True AMCG00021607
AMCG00021609 mRNA upstream 234318 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021610 mRNA upstream 265185 22947324 ~ 22956666 (-) True AMCG00021610
AMCG00021608 mRNA upstream 285531 22967670 ~ 22982532 (-) True AMCG00021608
TU108350 other downstream 1589973 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1948663 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2275760 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2313288 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2338239 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 473048 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 656112 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2721511 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3223305 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3409115 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile