RNA id: AMCG00021598


Basic Information

Item Value
RNA id AMCG00021598
length 1927
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00021598
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22634704 ~ 22638390 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTAACGCAGAGGGAGAAGATGCCAATAAGTTGGACGACATGGCTGCTTCGGTTTCCAGCTCCGGGCCGCCCAGTAAGAGCGCAGCTGCGGACCCGGGAGAGAGGAGCGCAGTTCCGTGCCTGATCCCAACTTTCGCAGACGCCTGTAACTTGGTGAACGCGCAGTACTCCTGCCTGGTGGTGGACACTCACAGGAGACACGTTGCTCTGTCTCCAATtctGAAAGGTGTCCCGATTGCCTACGACAACATTAAGATCTTGGGTAAACATGGAGATATATACGACGATCAGGGTTACATCCACATGGACATCGAAGCGGCCTTTGTCACTTTCAGACCCAAGAAAGGACAGAAGCTCCtgGGAGTTATAAATAAAGTGGGCGTCAATCATGTGGGGTGTCTGGTCCACGGCTGCTTCAACGCCTCGGTTCCCAAACCCCACCAGGTGACTCTTGAACAGTGGCAGGCGCTGGGCCTGACGGTGGGAGACAGCCTGGAGTTCGAGGTCTTCCAGTTGGATGCAGATGTGGCTGGAGTGCTCCTGATCAGAGGGAGACTGGATAAAAATAGGTTCAATGAAACGCAACCAAGCACAATTCCAGAAGAGGACCTGGCAGACGGCGAGGGCGAGGATCAGCCTGCAGAGGtgaaaaggaagaagaaaaagaagaagaaagacaagGAGAAGGACGGAGAGGTCTCCGGGACGGCGATCAGTGTGGATGAGTTGCCCGTGGAGGATCCGGTGAACGAGGAGGTGGATCTGACCCCCGGAGACCCGAACATGAACGGACACGTCGCCGAAGgaaagaggaagaagaagaagcacaaGAACAAACGACCGGAGGAGGAGCCtgagccggagccggagccacACGAGATTCACGAGCAGACTGGGGAGCCCAGCGACAAAGCTGCCAAGAAGAAGAGGAAACGGCCGAGTGAGGACGACGTCGACAAAGACGTGAAGGCGCCCGGTGCCAAGAAGAAGAGGCGGGATTGAGGCATAACGGGGACGGCCACAGTCCAGTGAACCGCCACAACACGAAGAACAAAACCGAGCTGACTGTTGTGTCCAGGAGCCGGGCCCGGGAGACGATACAGGGTCCTGGGAAAGATGCCGGTGCAAAGGATTATGGGAGGAGAACTGGGAAAACCTGtggtgctcattttaatattgcaagGCTTTTGTATTCACTCTTCCCTCGATCGTTAGACTCAATTTCGCTGTACAGCGCTGCATTGTAATCAGTGACACCGAGGAACCAGATATGAGTGCGATTATGTCAAGGGTTGGGAGAGATTTGAGATGCACGGCGGTGGTTGTCCACCAGAGAgcgctgtttgttttttgagaaaTGTTAACGGGACTTTTCCACTCTTTCCTGGCGACCTGCCTGTGTACGCTTGGCCGAGTGGCGCTGTGTTTAAGTGCATTTCTGTCAGTCGGGCCACTTCCACAGGGATACCGCAGTACAGTAACACATCGGCGATCTCCAACAAATAAACACGGAAGGTGATTTCACTGCCGGAGAAAGAAAAGGCCGAAGTGGGGAAATACGGCTTCTCTAAACAAGTTAGAAATGTTTACGTTCTGTCATTCCTCTTATGCCTCCCAAGACTGACAGTCGTataaagttatttaaacaaaagacttgcagtttagttttttccgtGTTTCTTGTCCAAAGTCTCGTATAGAAAACTGCCAAAAAGACTGTTTTTGTCTGAGTTTGATGAGTgcgaatgactgactgactaaacatttttatatttgtgattattagatctgttttgtcagaatagGTCTGATGGGTTGACAATGAACATGCCATATTTATACATCTTCCCTTTTAAATAtgacagttttatatttttaatagcgATCATATTTATGTGCATCAAAAAGAGCCCAGAAGACTTTG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108699 lncRNA downstream 5813 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 446564 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 849570 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 963389 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 1118470 21516032 ~ 21516234 (-) True G86893
TU108737 lncRNA upstream 52218 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 369004 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 437244 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 451212 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 455198 23093588 ~ 23106188 (-) True G87218
AMCG00021601 mRNA downstream 38595 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021600 mRNA downstream 45902 22587333 ~ 22588802 (-) True AMCG00021600
AMCG00021594 mRNA downstream 197822 22414264 ~ 22436882 (-) True AMCG00021594
AMCG00021592 mRNA downstream 328277 22303644 ~ 22306427 (-) True AMCG00021592
AMCG00021588 mRNA downstream 387902 22242229 ~ 22246802 (-) True AMCG00021588
AMCG00021599 mRNA upstream 6002 22644392 ~ 22649062 (-) True AMCG00021599
AMCG00021597 mRNA upstream 35153 22673543 ~ 22682139 (-) True AMCG00021597
AMCG00021603 mRNA upstream 84549 22722939 ~ 22724339 (-) True AMCG00021603
AMCG00021607 mRNA upstream 263195 22901585 ~ 22907039 (-) True AMCG00021607
AMCG00021609 mRNA upstream 278067 22916457 ~ 22937301 (-) True AMCG00021609
TU108350 other downstream 1551134 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1909824 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2236921 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2274449 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2299400 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 516797 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 699861 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2765260 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3267054 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3452864 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile