RNA id: AMCG00021599


Basic Information

Item Value
RNA id AMCG00021599
length 459
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00021599
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22644392 ~ 22649062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCACCAATAGAAAGATCATCTGGAGCCTGTTGGTGCTCTCTGTGCTGGAGATAGGGCTCGGGGTGTCCAGCATCGCCCTGGGAGCGGTGGGCATCAGCCAGGTCAGGGGCGGACAGAAGACCCAGCTGGGAGATGCTTCTCCGTTTCTCATATGTGGGCTCTGTGGAGTAATCTGTGCCAAGAAGAAGTCAGGACTAATTATGATATTATTTTCAGCCTGCTGTATCTGCGGCCTGATCGGAGGCATCCTGAACTTCCAGTTCGTGCGCGCGCTGGTGAAGAAGTCCACGGCGTTGTACTCCCTGCACCTGGCCGCCATGGCGCTGGCCTGCCTGGGCATCGGGGGCTGCACGCTGTCCGCCTGGCTCACGTGTCGCCTCGCCAGCAACGAACAGCAGAGGATGTTCCTGGAGAGGGAGCACTCTCTACACCACTCCCACGAGATGACCGAGAAA

Function

GO: NA

KEGG:

id description
K22195 TMEM196; transmembrane protein 196

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108699 lncRNA downstream 15501 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 456252 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 859258 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 973077 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 1128158 21516032 ~ 21516234 (-) True G86893
TU108737 lncRNA upstream 41546 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 358332 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 426572 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 440540 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 444526 23093588 ~ 23106188 (-) True G87218
AMCG00021598 mRNA downstream 6002 22634704 ~ 22638390 (-) True AMCG00021598
AMCG00021601 mRNA downstream 48283 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021600 mRNA downstream 55590 22587333 ~ 22588802 (-) True AMCG00021600
AMCG00021594 mRNA downstream 207510 22414264 ~ 22436882 (-) True AMCG00021594
AMCG00021592 mRNA downstream 337965 22303644 ~ 22306427 (-) True AMCG00021592
AMCG00021597 mRNA upstream 24481 22673543 ~ 22682139 (-) True AMCG00021597
AMCG00021603 mRNA upstream 73877 22722939 ~ 22724339 (-) True AMCG00021603
AMCG00021607 mRNA upstream 252523 22901585 ~ 22907039 (-) True AMCG00021607
AMCG00021609 mRNA upstream 267395 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021610 mRNA upstream 298262 22947324 ~ 22956666 (-) True AMCG00021610
TU108350 other downstream 1560822 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1919512 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2246609 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2284137 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2309088 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 506125 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 689189 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2754588 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3256382 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3442192 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000319_02008046_02015449.mRNA True 1034 mRNA 0.49 2 CI01000319 2008046 ~ 2016081 (-)