RNA id: AMCG00021600


Basic Information

Item Value
RNA id AMCG00021600
length 1018
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00021600
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22587333 ~ 22588802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGAAGACATGATGCAGGACGAGTCGAGCTCCCCGGTGTCTCCAGTGGACAGCCTGAGCAACAGTGAAGAAGAACTCGACAGGCAACAGAAAAGATGTGGGAGGAAAAGGAGACCGAGCAGGAAAAATGGGGAGGATTCAGATAGCCCTACCCCtgggaaaagaggaaaaaagtccagcagcagcagcccgcAGTCTTTCGAGGAGCTGCAGACCCAGAGAGTCATGGCCAACGTGCGGGAGCGCCAGAGGACGCAGTCCCTCAACGAAGCTTTCGCCGCTTTACGGAAAATCATTCCCACCCTGCCTTCAGACAAACTGAGTAAGATTCAGACGCTCAAACTGGCAGCCAGGTACATCGATTTCCTCTACCAAGTACTACAGAGCGATGAGCTGGACTCCAAAATGGCAAGTTGTAGTTATGTGGCTCATGAAAGACTAAGCTATGCCTTTTCTGTGACAACTGGTTTTCATTTACCTATCCCAAACGGGGACTCTGGAGTCTGAAGCTGGATTTGTACAAAGCAgcgttttttggggggtggaaaatatgaaaatatagaaAGCCAAGAGGACAGGGCGAGAGGAGCACTTACAGGAAAAAAAGGCCATTTGGACACTGAACAATCATTCTGACCTGTGTTTGAAACGTTTCTGTTTGACGATGAATGTTGGACATTTATTTCTCTATGCATGCCTTTGACCAGCCGTGCCTACTTTGTATGAAGAGGGAGATGGATTTAAGATGGCCTTTTTTTAAGCTAGGCTGTCGAGGAAAACTGTTCTAGccataaacatattttgaacCTTGGCTCATACCTGTGCAAACCTttataggttttttttaattattattattttctgaaatacattttatttatttattgatgaccCATGTTACGATGCAGAATAGATCCGGTGTCTACATGCattcttatttttatgattgtgtTGTAAATaactttgtatatttttctgcaataaaatacatatgatTTTTAAACGTAAACAGACA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108574 lncRNA downstream 399193 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 802199 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 916018 21666402 ~ 21671315 (-) True AMCG00021569
TU108455 lncRNA downstream 1071099 21516032 ~ 21516234 (-) True G86893
TU108442 lncRNA downstream 1293430 21291373 ~ 21293903 (-) True G86881
TU108699 lncRNA upstream 39797 22628599 ~ 22628891 (-) True G87092
TU108737 lncRNA upstream 101806 22690608 ~ 22690889 (-) True G87116
TU108813 lncRNA upstream 418592 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 486832 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 500800 23089602 ~ 23091111 (-) True G87203
AMCG00021594 mRNA downstream 150451 22414264 ~ 22436882 (-) True AMCG00021594
AMCG00021592 mRNA downstream 280906 22303644 ~ 22306427 (-) True AMCG00021592
AMCG00021588 mRNA downstream 340531 22242229 ~ 22246802 (-) True AMCG00021588
AMCG00021589 mRNA downstream 345645 22240700 ~ 22241688 (-) True AMCG00021589
AMCG00021586 mRNA downstream 356149 22228224 ~ 22231184 (-) True AMCG00021586
AMCG00021601 mRNA upstream 6828 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021598 mRNA upstream 45902 22634704 ~ 22638390 (-) True AMCG00021598
AMCG00021599 mRNA upstream 55590 22644392 ~ 22649062 (-) True AMCG00021599
AMCG00021597 mRNA upstream 84741 22673543 ~ 22682139 (-) True AMCG00021597
AMCG00021603 mRNA upstream 134137 22722939 ~ 22724339 (-) True AMCG00021603
TU108350 other downstream 1503763 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 1862453 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2189550 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2227078 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2252029 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 566385 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 749449 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2814848 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 3316642 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3502452 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile