RNA id: AMCG00021607


Basic Information

Item Value
RNA id AMCG00021607
length 2157
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00021607
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22901585 ~ 22907039 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattattccagTGTAATGCACTGGGGTACGTTTGCATAGAGAAGTAGAAGTAATAATTAAATgctaattttaaaatagtacAATTGAGAACAAATATATAGATGTTGCAGATTATTCTCCTTACAAAGTAAATGGTACAAAGAGCAACCCCCGTAGCTGTTTGGTTTCCGGGTAGTCTGCCCCTATTGTGTTTCAAGTGATTCTTTGTTGTGGGCCGGTTCTTCTCGgggttgctgttgttgttgagtTGGAAAGTTAAAATGCCGGTGTCGGTGAAGACAAGGCAGTCTCTGGCTGAGATCTTCGAATCCCCAAGCGATGAAGAGGACTTCGATGGCTTCAGAGCCTCTCTCCCGATGGACACGTCCTCTGAAGACAGCAGAGACAGTCTTCAGTCCCTGGACCAGGAAAAAACAGACCCGTGCTTCCGGTCCAAGTACATCACGGAGGAACTGCTGAAGATCTTCACGGAGGACACGgacacggaggaggaggagttcGAGGGATTCACAGAGGCGGGGCTGGAGCTCAACGACTGGATGAAGTCCATGTCCATGGACTCGGACGAGAGCAGCGAGGAGGACACGGGCTTCTGCTCGGACGGCGAGCCTGAGGCGCCGGTGCGGAGGAGGAGCTCGGGCCTGTGCGTCGCCTTCAGGTTCCCCACGAAGAAGAGCCAGCCGGCCAAGCAGcccgagagggagaggaagcCGGAGTCCTCCAGGACCGACGGCCGGGGGCGGAGAGGAAAAGCACAGCAGGCCGATGCTTGGTCCGAGTCGGAGGAGGAACAAGGCCGTGGGGGCGGCCTGAGTGTTGCCCTGCAGAAAAGGGCCAATAACAtcaaggagaacaaggaaatGcttGCTAAATTGCTGGCGGAGTTCAATTCGATGCCTGAGCTGCTGCCCATGAAAACCCCAGCAaaaaagaagaaatccCCAAAGAAGCCGGTCTCCGAGGGGCAGAGTGGGCGCAGGAACCCCACCCGCAGCGCCCGGCCACCCGAGCACTTCGCCGTCGAGATCTCGCCCTCCAAGATCATGGAGCAGCTGCAGGGCATGCGCAAGAGGGCCAAGATCAGGAAGAGGCTGCTGCGGGTGAATGAAGATGTGGACGGCGGGGACCCCCCCAGGAGGAAGCACGCCAAACGCAGGGAGTCCCGCGCAGTGGAGGACATCACTGAGGACGATCTGGAGAACGTGGCCTACACCAGCAAAGACAAGATCTATGATAACGTTCACGGCAGCACGTGCCACCAGTGCAGACAGAAGACCATCGACACCAAGACAGAGTGCAGGAACCCCAACTGCTGGGGTGTGAGAGGCCAGTTCTGCGGGCCCTGCCTGCGCAATCGCTACGGGGAGGACGTGCGCGAGGCCCTCTTGGACCCTATGTGGGTGTGCCCCCCGTGCCGAGGGATCTGCAACTGCAGCTTCTGCCGTAAGCGGGACGGCCACTGTGCCACGGGGATTCTGATCCACATGGCCAAATTCTACGGCCACGACAACGTCCGAGAGTACCTGGAGAGTCTTAAGAAACATCTTGGTGATGAAGACTGACAATGAACCGAGCTGCTTAAAGTGAAGCCTTCATTGGGAGTGAAGGAAACAACCTACAACTGATGGACATTCGAAAGCAAAGATTGAGCCTGGCCTTGGAGCTTCTTACGATGCTTTGGCACAAATAGTGAATCCTTTTAAGAGTGTTTTAGtacaatcacttttttttttatgcagtagAAATAGGATTCTCACTTTGTTTTATCTTCCTAAAAGACCCATGGAGTCTATAAAGCCTCTTACTATTTTAGATTAGAGAAATGGAcaaatgctgtatttttcaaGGGCCTGCTGcactttttcttctcattttagCAAATGTTTTTACTTGCAACAATTCTTGCACTTTTTGTTTGTCGCAGAAATTCATAAtgctcactttttttttgtggctaAAATTCTGCTTGAAGAATAATGAagcagctgttttttctttcaataggGAAGGTGAActtaattgtatgtgtgtgtatataaaaatctatatataagGAACAAGATAAATCCAAGGTTTTGTAAACTTCAGTTTTTCAATAAATCCacaattttcataaaaaaaaaaaaacacctttattAAAAATCATTGTTACAAAAA

Function

GO:

id name namespace
GO:0051301 cell division biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108737 lncRNA downstream 210696 22690608 ~ 22690889 (-) True G87116
TU108699 lncRNA downstream 272694 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 713445 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 1116451 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 1230270 21666402 ~ 21671315 (-) True AMCG00021569
TU108813 lncRNA upstream 100355 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 168595 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 182563 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 186549 23093588 ~ 23106188 (-) True G87218
TU108898 lncRNA upstream 290542 23197581 ~ 23197843 (-) True G87234
AMCG00021603 mRNA downstream 177246 22722939 ~ 22724339 (-) True AMCG00021603
AMCG00021597 mRNA downstream 219446 22673543 ~ 22682139 (-) True AMCG00021597
AMCG00021599 mRNA downstream 252523 22644392 ~ 22649062 (-) True AMCG00021599
AMCG00021598 mRNA downstream 263195 22634704 ~ 22638390 (-) True AMCG00021598
AMCG00021601 mRNA downstream 305476 22595630 ~ 22596109 (-) True AMCG00021601
AMCG00021609 mRNA upstream 9418 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021610 mRNA upstream 40285 22947324 ~ 22956666 (-) True AMCG00021610
AMCG00021608 mRNA upstream 60631 22967670 ~ 22982532 (-) True AMCG00021608
AMCG00021616 mRNA upstream 110619 23017658 ~ 23022801 (-) True AMCG00021616
AMCG00021615 mRNA upstream 119273 23026312 ~ 23048843 (-) True AMCG00021615
TU108350 other downstream 1818015 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2176705 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2503802 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2541330 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2566281 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 248148 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 431212 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2496611 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2998405 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3184215 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile