RNA id: AMCG00021608


Basic Information

Item Value
RNA id AMCG00021608
length 723
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00021608
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 22967670 ~ 22982532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAGGCAGAGGACAGCCCCTGCGGACCAGAAGACACCGGGGTCTTGGCTACCTGGAGGTGGAACAAAAGCGCGAAGGATCAAGTCCAGCTGAAGCAGAAGATCAGGGATCTACCTGCGCTGCTCAAACACGGACTGCATTTGCGGAAGAAAAGTGTGGAGGCAGTGAGTAGTCATTGTGTGGGAGCTGCGCGGTTCCCAGCTCCGGGCGGGTGTAGCGGGCGGGCCCTGAGAAACGCGTTCTTATCTCACGGCCCGTATCctgcaaaagacaaaatacacCTGGCACGGATTATAAGGAGAAGCTATGTGGGCCTGGAGCTGGTGCAGTGGCTGCTGGAGCAGTGCCTGTTCATCCAGGGCAGGATGGTGGCGGCGAGAGTGTGGCAGATCCTGCTGGAGCTGGGCATCTTATTGTCAGCCGACCAGCACATCGTGTTCGAGGACTCCAACACCTTCTACCAGTTCTCCTACGATGAGTGCGAGACCCAGCAGTGCGAGTACAAGAAAGAGAAGGAGTGGCAGAACGGCGTGCGGCTCCTGCTGCAGCTTGTGCCCTACGTGCAGTTCAGGGTGGGAGTGATCAGCCCCTCAGCCAGCCTTGCCCTGATCCAGTTGGATGCGGTTTGGTTTGGCTCAGTCCAGCCCatccagcccagcccagcccatcCAGCAGAGATTGTGCGTCCGAGGCCAGGCCTGTCGGCGTGCAGTGATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108737 lncRNA downstream 276781 22690608 ~ 22690889 (-) True G87116
TU108699 lncRNA downstream 338779 22628599 ~ 22628891 (-) True G87092
TU108574 lncRNA downstream 779530 22130806 ~ 22188140 (-) True G86997
TU108491 lncRNA downstream 1182536 21784876 ~ 21785134 (-) True G86925
TU108475 lncRNA downstream 1296355 21666402 ~ 21671315 (-) True AMCG00021569
TU108813 lncRNA upstream 24862 23007394 ~ 23014782 (-) True G87181
TU108827 lncRNA upstream 93102 23075634 ~ 23076015 (-) True G87193
TU108838 lncRNA upstream 107070 23089602 ~ 23091111 (-) True G87203
TU108868 lncRNA upstream 111056 23093588 ~ 23106188 (-) True G87218
TU108898 lncRNA upstream 215049 23197581 ~ 23197843 (-) True G87234
AMCG00021610 mRNA downstream 11004 22947324 ~ 22956666 (-) True AMCG00021610
AMCG00021609 mRNA downstream 30369 22916457 ~ 22937301 (-) True AMCG00021609
AMCG00021607 mRNA downstream 60631 22901585 ~ 22907039 (-) True AMCG00021607
AMCG00021603 mRNA downstream 243331 22722939 ~ 22724339 (-) True AMCG00021603
AMCG00021597 mRNA downstream 285531 22673543 ~ 22682139 (-) True AMCG00021597
AMCG00021616 mRNA upstream 35126 23017658 ~ 23022801 (-) True AMCG00021616
AMCG00021615 mRNA upstream 43780 23026312 ~ 23048843 (-) True AMCG00021615
AMCG00021614 mRNA upstream 79001 23061533 ~ 23067739 (-) True AMCG00021614
AMCG00021620 mRNA upstream 113948 23096480 ~ 23109751 (-) True AMCG00021620
AMCG00021622 mRNA upstream 144688 23127220 ~ 23127477 (-) True AMCG00021622
TU108350 other downstream 1884100 21063858 ~ 21083570 (-) True G86808
TU108218 other downstream 2242790 20721884 ~ 20724880 (-) True AMCG00021534
TU108155 other downstream 2569887 20395612 ~ 20397783 (-) True G86649
TU108146 other downstream 2607415 20358301 ~ 20360255 (-) True G86640
TU108097 other downstream 2632366 20329422 ~ 20335304 (-) True G86600
TU108883 other upstream 172655 23155187 ~ 23160977 (-) False AMCG00021619
TU108932 other upstream 355719 23338251 ~ 23338484 (-) True G87263
TU109433 other upstream 2421118 25403650 ~ 25406538 (-) True G87674
TU109596 other upstream 2922912 25905444 ~ 25908005 (-) True G87806
TU109647 other upstream 3108722 26091254 ~ 26096784 (-) True AMCG00021700

Expression Profile